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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGGAGATTTCGGTCTTGCCAAGGTCTTAACTGAGAACTGTGATACCAACACAGATTCAAATACCTGGTTTGCATGCTCTTATGGCTACATTGCTCCAGgtactcatcttctctttcttagctttcttgcatattcactgttttaatatctaaagatttgaaattgtgtgtctag

Basic information

species Arabidopsis thaliana
transcript AT4G20140.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G20140.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G09510.1 (Glycine max), 5'ss of exon 1
TTAGGAGATTTCGGTCTTGCCAAGGTCTTAACTGAGAACTGTGATACCAACACAGATTCAAATACCTGGTTTGCATGCTCTTATGGCTACATTGCTCCAGgtactcatc---ttctctttcttagctttcttgcatatt-cactgtttt----aatatctaaagatttgaaattgtgtgtctag------------------
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TTGGGAGATTTTGGACTGGCAAAAGCACTAACTGAGAATTGTGACTCCAATACTGAGTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGgtagtgatcaaactgctagtttgaattgatttttatcttacattattctgcctaatttttaaccact-gaacaaacttgtttaatattggctttattttcag