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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgaaatagcgatactgttcttaaattgcatagattcatcttctagaatctagaggccacggtatatttttgaacatttgtttccagctacctcttgttcaatttgttttaaacttgtatattcgtgcaatctgcagCTCGGAGCCTGATTTTTTAGATGAAATCGTGAAGAATACTTTCAGGATGCTGAATGAATTGTCTCCATGTGTAATCCCTGATGATCTACCAGGAATTGAA

Basic information

species Arabidopsis thaliana
transcript AT4G19510.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876702|gb|AU237533.1|AU237533
EST:     GCTCTGAAGACAGCTTCCAATATCCGTGGCTTTGTATATCCTGAGAACAG                         CTCGGAGCCTGATTTTTTAGATGAAATCGTGAAGAATACTTTCAGGATGCT
genomic: GCTCTGAAGACAGCTTCCAATATCCGTGGCTTTGTATATCCTGAGAACAGgtacctgaaa ... caatctgcagCTCGGAGCCTGATTTTTTAGATGAAATCGTGAAGAATACTTTCAGGATGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagctacctcttgttcaatttgttttaaacttgtatattcgtgcaatctgcagCTCGGAGCCTGATTTTTTAGATGAAATCGTGAAGAATACTTTCAGGATGCTGAATGAATTGTCTCCATGTGTAATCCCTGATGATCTACCAGGAATTGAA
                  aatttgttttaaactt  TA-rich tract