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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcattatttggaaaaaataaaaatgttttcttccttcctttagcttccttgtctgagtattttcttgatcttcgcttttcagGCAATAGTTAATGAAGTTCTTGAGACGATAGAGCTTGAGGAGATTAAAGATTCCTTAGTAGGAGTTCCTGGAATTAGCGGTGTAACAGCAGAACAACGCA

Basic information

species Arabidopsis thaliana
transcript AT4G15236.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124759753|gb|EH849883.1|EH849883
EST:     ACTCTGCTTGGCTTCGACTTCCTTGTAACATTAGTTCAGAAACTAAGAGT                         GCAATAGTTAATGAAGTTCTTGAGACGATAGA
genomic: ACTCTGCTTGGCTTCGACTTCCTTGTAACATTAGTTCAGAAACTAAGAGTgtaagtcatt ... cgcttttcagGCAATAGTTAATGAAGTTCTTGAGACGATAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttccttcctttagcttccttgtctgagtattttcttgatcttcgcttttcagGCAATAGTTAATGAAGTTCTTGAGACGATAGAGCTTGAGGAGATTAAAGATTCCTTAGTAGGAGTTCCTGGAATTAGCGGTGTAACAGCAGAACAACGCA
                                   tcttgat  putative branch site (score: 4)
                                ttttcttgatcttcgc  CT-rich tract
                              tattttctt  TA-rich tract