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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca...

Basic information

species Arabidopsis thaliana
transcript AT4G13940.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca-----
||| || ||||| ||||| |||||||| |||||||||||| | |  ||  | ||  | ||||| ||||| ||||| |||||||| |||||||||||||||||   |     |    |   | | || ||| |     || || |   || |||  |||| | |   ||    |    |     |   |      | | |      
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatccc---ctccctccctttctaatcccattatattt--cagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G015295_T01 (Zea mays), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgt-attgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca--
||| || ||||| ||||| |||||||| |||||||||||| | |  ||  | ||  | ||||||||||||||||| ||||| || ||||||||||||||||| |||  |  |    ||| |||   | |   |  |   | |||||  | ||  || | | ||| | | | ||| |   | |  || ||     | | | |  
GGAGACCACCACGGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCTGCCATTAACGTCAACGATTCCGTCACCAAGAGCAAGgtgattcttgcttgcctttctttggatccatttcctttcagatctg--acgttctt-gttgtgtggatctagatcctgcatgactagcagtgtgagatttact

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G111909_T01 (Zea mays), 5'ss of exon 2
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca------
                                                |||||| |   || |||||||||| || |||||||| |||||||||||||||||  |     |||    ||  | |  |    |     |  |      | || ||| | | ||| | | | ||| |   | | ||| ||     | | | |      
----------------------------------------------ACAACTCTCTCTCTCACTGCCATTAATGTCAACGACTCCGTCACCAAGAGCAAGgtgat-----tcaagcgtgcctttggatccatttcctttcagacctgacgttttt-gttgtgtggatatagatcctgcatgattagcagtctgagatttacgtgtt

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G11480.1 (Glycine max), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgta--------ttgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca
|||||| |||||||| ||||||||||| || |||||||||   ||||| |||||| | |||||||| ||||| || || ||||||||||||||||||||||||        ||   |  ||||| |  |   ||  | ||| | | |  |  | | |   ||  | ||||| |||||||    ||| || ||     ||         
GGAAACCACCACTGGAGTTAAGAGGCTCTATCAGATGCAGGCGAATGGGACTCTTCTCTTCCCTGCTATTAATGTCAATGACTCTGTCACCAAGAGCAAGgtaatgtctctttttcccccagatctagtgtcttttttgtgttaaaatgtaggattgag-ttcggatctgttgtttttg----gatgggttttgtgccattggtg---

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA05G28480.1 (Glycine max), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatctt--------cagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca
|||||| |||||||||||||||||||| || |||||||||   ||||| |||||  | |||||||| ||||| || || |||||||| ||||||||||||||| ||    |        ||||| || | ||||     || | | |  |  | | |   || || ||||| ||| |||    ||| || ||     |          
GGAAACCACCACTGGTGTTAAGAGGCTATATCAGATGCAGGCGAATGGGACTCTACTCTTCCCTGCTATTAATGTCAATGACTCTGTTACCAAGAGCAAGgtaatgtctcttcttctcccagatctggtgctttttatatgtttaaatgtaggtttgag-ttcagatctgttgttcttg----gatgggttttgtggcgttggtg---

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G36620.1 (Glycine max), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca
 ||||| ||||| ||||| |||||||| ||||||||||||   |||||  | || |||||||||||||| ||||| || ||||| ||||||||||||||||||   | | | | |||| ||| | |  | ||  |  |   || |  |      ||       ||| |||||||| ||  | |  |              
AGAAACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGCCAATGGCTCCCTCTTGTTCCCTGCCATCAACGTCAATGACTCGGTCACCAAGAGCAAGgtacgtaccat-acattt-tttgtctgtttgt--ttgtctgtcggtgaaagaaata---taaaagtgtttgatgcaatttgttgcag-------------

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv17s0000g09840.t01 (Vitis vinifera), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca-----
 || || ||||| ||||| |||||||| ||||||||||||  ||||||||||||||||||  |||| || || || ||||| ||||| ||||||||||||||| ||   |  |||||| |  || |  |      | |  || | ||   | ||  |  || |  |||   ||      || ||      |  ||    |     
AGAGACAACCACCGGTGTGAAGAGGCTGTACCAGATGCAGGCAAATGGAACTCTTTTGTTTGCTGCTATCAATGTCAACGATTCTGTTACCAAGAGCAAGgtaatgga-tctagatttttcactctttttagctcgtt--atatactgaatttt--gtgctattatttcaaatttcgatggttttgtgctattatttcaagtttg

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv05s0029g00330.t01 (Vitis vinifera), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtt-tctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca-------------------------------------------------------
||| || ||||| ||||||||||||||||||||||||||    || || ||| |  | |||||||| ||||| || || ||||||||||||||||||||||||||   || ||||| |||  | |||   | |  |  | ||      |     || | |  || | | | | |  |||     ||  |    | ||||                                                         
GGAGACCACCACCGGTGTTAAGAGGCTTTACCAGATGCAAGCTAACGGCACTTTGCTTTTCCCTGCTATTAATGTCAATGACTCTGTCACCAAGAGCAAGgtatt---ctccagatctgtgatatttgggaattgttttcaacgattcaaccaatttgtttggtggatctagtttggatta--ctagaagagtcgtaattttgtgttttgttttgttttgtttttcttaacaattttctgttctggatgcaaacag

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S20_291V6.1 (Physcomitrella patens), 5'ss of exon 2
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattg--atcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca--------------------------------
||| || || || || || ||| |||| |||||||||  | | || ||||  || |||||||||||||| || || ||||||||||| || |||||||||||| ||  | |    | |       |     |||| || |      ||  |       | |  |  |    ||   || ||||    |     |     |                                  
GGAGACGACGACGGGAGTGAAGCGGCTGTACCAGATGATGGACAACGGAAGCCTGTTGTTCCCTGCCATCAATGTGAACGACTCTGTGACGAAGAGCAAGgtaatgtgacccgtgggtggcagattccgtaagtgttgttgtggacgcgtgtgtggggggtgggggggccgtggaacggtaggagggagggggagtgtgtggtgtcgggtgctgacgtttgggtcgctgtgcag

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S20_229V6.1 (Physcomitrella patens), 5'ss of exon 2
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca
 || || || || || || ||| |  | |||||||||  | | || ||| |||| |||||||| ||||| ||||| |||||||||||||| |||||||||||| ||   | |     |||    |  ||   | |  |  || || |  |    |   |   | |    ||| ||  | || |      ||         
AGAGACGACGACCGGAGTGAAGCGTTTGTACCAGATGATGGACAACGGATCTCTGTTGTTCCCCGCCATCAACGTGAACGACTCTGTCACGAAGAGCAAGgtaatgtggtccgtgactgtcggatacctttcgtt--tggatgtgatttgatggtgtgtggttggcggctgacgct-tgggttgttgtgcag--------

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ11220 (Selaginella moellendorffii), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca
||| || ||||||||||| |||||||| ||||||||||||   |||||| | ||  | ||||| || || || || ||||| || |||||||||||||||||| | |        ||||||| ||  || |  | | ||    ||||   || | ||  || |  ||||  |                            
GGAGACCACCACTGGTGTCAAGAGGCTCTACCAGATGCAGTCGAATGGATCGCTGCTCTTCCCGGCTATCAATGTCAACGATTCAGTCACCAAGAGCAAGgtactcacgacttcttttgtttattgtcttgaaaagttag---tgctca-tcgtgagtgcttttcttttacag---------------------------

upper sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ11444 (Selaginella moellendorffii), 5'ss of exon 1
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca
||| || ||||||||||| |||||||| ||||||||||||   |||||| | ||  | ||||| || || || || ||||| || |||||||||||||||||| | |        ||||||| ||  || |  | | ||    ||||   || | ||  || |  |||||   |                          
GGAGACCACCACTGGTGTCAAGAGGCTCTACCAGATGCAGTCGAATGGATCGCTGCTCTTCCCGGCTATCAATGTCAACGATTCAGTCACCAAGAGCAAGgtactcacgacttcttttgtttattctcttgaaaagttag---tgctca-tcgtgagtgcttttctttttacag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828729|gb|CK118413.1|CK118413
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|124857539|gb|EH941976.1|EH941976
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACT
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACT
EST: gi|124730116|gb|EH821518.1|EH821518
EST:     TCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: TCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|124888786|gb|EH967688.1|EH967688
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGG
EST: gi|124758583|gb|EH848713.1|EH848713
EST:     CACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|125244457|gb|EL258542.1|EL258542
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATG
EST: gi|125240937|gb|EL255022.1|EL255022
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|124799030|gb|EH888709.1|EH888709
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|125310381|gb|EL324466.1|EL324466
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGG
EST: gi|124791862|gb|EH881541.1|EH881541
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTG
EST: gi|125240341|gb|EL254426.1|EL254426
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATG
EST: gi|125308558|gb|EL322643.1|EL322643
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACCTTAGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGA
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAAC-TT-GTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGA
EST: gi|125243847|gb|EL257932.1|EL257932
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGA
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGA
EST: gi|125272496|gb|EL286581.1|EL286581
EST:     CCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|164193796|gb|EL983334.1|EL983334
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTA
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTA
EST: gi|125315655|gb|EL329740.1|EL329740
EST:     CGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|124891897|gb|EH970799.1|EH970799
EST:     TTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: TTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|125066862|gb|EL133578.1|EL133578
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCA
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCA
EST: gi|125033016|gb|EL105285.1|EL105285
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|125308010|gb|EL322095.1|EL322095
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCAC
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCAC
EST: gi|116450193|gb|EG492785.1|EG492785
EST:     ACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: ACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|164121391|gb|ES094661.1|ES094661
EST:     AACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: AACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|163999280|gb|ES181004.1|ES181004
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCAC
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCAC
EST: gi|164165264|gb|ES062433.1|ES062433
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTG
EST: gi|125167115|gb|EL192585.1|EL192585
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTT
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTT
EST: gi|125106043|gb|EL159630.1|EL159630
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACT
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACT
EST: gi|124770297|gb|EH860427.1|EH860427
EST:     TTAACGTTAACGACTCNGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: TTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|125327203|gb|EL341283.1|EL341283
EST:     GCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAG
genomic: GCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGAC-AACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAG
EST: gi|125017550|gb|EL089819.1|EL089819
EST:     CACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|116453234|gb|EG495826.1|EG495826
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|164177845|gb|ES000869.1|ES000869
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTC
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTC
EST: gi|124790520|gb|EH880199.1|EH880199
EST:     CGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|124823552|gb|EH908418.1|EH908418
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGG
EST: gi|47828375|gb|CK118059.1|CK118059
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|125323772|gb|EL337852.1|EL337852
EST:     TAACGACTCTGTCACCAAGAGCAAG                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
genomic: TAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGG
EST: gi|125084942|gb|EL144973.1|EL144973
EST:     CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAA                         TTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAG
genomic: CTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatct ... tgatttacagTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaaca