1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCATTCAGATGGATCACACTCCTATTGACTCAAGAATTCAATTTCGTGGAAAGCCTTCACATCTGGGACACACTCTTAAGCGACCCGGAAGGTCCTCAGgtagtattcagcttactactattcagcttctgtaagttgtgaacgagatcaatttcaaatgttgcatttttataagtcattaaacgttcaaatacctctg...
species | Arabidopsis thaliana |
transcript | AT4G13730.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACACTCTTAAGCGACCCGGAAGGTCCTCAG GAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGTEST: gi|164039994|gb|ES206097.1|ES206097
genomic: CACACTCTTAAGCGACCCGGAAGGTCCTCAGgtagtattca ... tattttgcagGAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGT
EST: ACACACTCTTAAGCGACCCGGAAGGTCCTCAG G-AACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGTEST: gi|164004002|gb|ES213813.1|ES213813
genomic: ACACACTCTTAAGCGACCCGGAAGGTCCTCAGgtagtattca ... tattttgcagGAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGT
EST: ACACACTCTTAAGCGACCCGGAAGGTCCTCAG GAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGTEST: gi|116409994|gb|EG452586.1|EG452586
genomic: ACACACTCTTAAGCGACCCGGAAGGTCCTCAGgtagtattca ... tattttgcagGAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGT
EST: AAAGCCTTCACATCTGGGACACACTCTTAAGCGACCCGGAAGGTCCTCAG GAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGCAGGCGT
genomic: AAAGCCTTCACATCTGGGACACACTCTTAAGCGACCCGGAAGGTCCTCAGgtagtattca ... tattttgcagGAAACACTACTGCGGATATGCTGTGCAATGTTAATTCTAGTTCGAAGGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTCAGATGGATCACACTCCTATTGACTCAAGAATTCAATTTCGTGGAAAGCCTTCACATCTGGGACACACTCTTAAGCGACCCGGAAGGTCCTCAGgtagtattcagcttactactattcagcttctgtaagttgtgaacgagatcaatttcaaatgttgcatttttataagtcattaaacgttcaaatacctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagatcaa