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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCTTACTTCTGCCTCTGCATCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAAGTATCCTAGCTTCCTCTGCAAATCCAATAACAAAGATgtatatcctttctttcttacaacttctaacaaaaaaccttgagtactataattgaatggtttcttcttcttctttttactaacag

Basic information

species Arabidopsis thaliana
transcript AT4G12830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124940342|gb|EL016802.1|EL016802
EST:     CCAATAACAAAGAT                         GACTATCTCATTGATGCTCCTGTTTCTGTTGGAGATGGATTCTCTTTTAGT
genomic: CCAATAACAAAGATgtatatcctt ... ttactaacagGACTATCTCATTGATGCTCCTGTTTCTGTTGGAGATGGATTCTCTTTTAGT
EST: gi|125024904|gb|EL097173.1|EL097173
EST:     CCAATAACAAAGAT                         GACTATCTCATTGATGCTCCTGTTTCTGTTGGAGATGGATTCTCTTTTAGT
genomic: CCAATAACAAAGATgtatatcctt ... ttactaacagGACTATCTCATTGATGCTCCTGTTTCTGTTGGAGATGGATTCTCTTTTAGT