Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttaggttcttgatttatgcaatggcaagttatgtatagaagaaaagaagttatgtatagtgagtgtgctctaaccactaatatatgtaatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGTTTGGAAACTCCGGTGACATCAAGCCCATTGATCGCGTGGTACCTTTCCA

Basic information

species Arabidopsis thaliana
transcript AT4G12800.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125141573|gb|EL179074.1|EL179074
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTCAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAAC
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAAC
EST: gi|125222875|gb|EL236960.1|EL236960
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTG
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTG
EST: gi|125225469|gb|EL239554.1|EL239554
EST:     AAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGG
genomic: AAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGG
EST: gi|47832153|gb|CK121837.1|CK121837
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125046849|gb|EL119118.1|EL119118
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125092252|gb|EL150075.1|EL150075
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTG
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTG
EST: gi|124966951|gb|EL041019.1|EL041019
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCAT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCAT
EST: gi|125274073|gb|EL288158.1|EL288158
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCA
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCA
EST: gi|86060598|gb|DR356355.1|DR356355
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125233872|gb|EL247957.1|EL247957
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCA
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCA
EST: gi|125073857|gb|EL138036.1|EL138036
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGT-CAACCAATCAACGGTGATCCATT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATT
EST: gi|125267758|gb|EL281843.1|EL281843
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125098323|gb|EL154504.1|EL154504
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGG
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGG
EST: gi|124739239|gb|EH830401.1|EH830401
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAACCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124731145|gb|EH822547.1|EH822547
EST:     CTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|116465392|gb|EG507984.1|EG507984
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125228105|gb|EL242190.1|EL242190
EST:     CCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124884588|gb|EH963490.1|EH963490
EST:     TCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: TCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|47829726|gb|CK119410.1|CK119410
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124862535|gb|EH946972.1|EH946972
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|47830003|gb|CK119687.1|CK119687
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125032323|gb|EL104592.1|EL104592
EST:     AATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTC
genomic: AATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTC
EST: gi|47828209|gb|CK117893.1|CK117893
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125185576|gb|EL200530.1|EL200530
EST:     TAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: TAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|116471330|gb|EG513922.1|EG513922
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAATTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124799591|gb|EH889270.1|EH889270
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATC
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATC
EST: gi|86060600|gb|DR356357.1|DR356357
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTTCATTCGGAA
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATT-CAT-CGGAA
EST: gi|124734306|gb|EH825708.1|EH825708
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCA
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCA
EST: gi|47829918|gb|CK119602.1|CK119602
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|152034850|gb|BP838454.2|BP838454
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATT-ATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|47830584|gb|CK120268.1|CK120268
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|164078122|gb|EL989680.1|EL989680
EST:     CACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|164173557|gb|ES008590.1|ES008590
EST:     CTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAGTCAACGGTGATCCATTCATCGGAAGT
genomic: CTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124930608|gb|EL008041.1|EL008041
EST:     CTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124913773|gb|EH987647.1|EH987647
EST:     AAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: AAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125305349|gb|EL319434.1|EL319434
EST:     TCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATACGGAAG
genomic: TCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCAT-CGGAAG
EST: gi|125320178|gb|EL334263.1|EL334263
EST:     CTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124912493|gb|EH986573.1|EH986573
EST:     CGACCAAAAGAGCCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTACAACCAATCAACGGTGATCCATTCATC
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTT-CAACCAATCAACGGTGATCCATTCATC
EST: gi|124878757|gb|EH958194.1|EH958194
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124948428|gb|EL024175.1|EL024175
EST:     GAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: GAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125048885|gb|EL121154.1|EL121154
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTACAACCAATCAACGGTGATCCATTCAT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTT-CAACCAATCAACGGTGATCCATTCAT
EST: gi|125327122|gb|EL341202.1|EL341202
EST:     CCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|86082080|gb|DR377839.1|DR377839
EST:     GACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTG-TAAATCCGACCAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAG
genomic: GACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGA-CAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAG
EST: gi|125059482|gb|EL128159.1|EL128159
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCA
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCA
EST: gi|47830468|gb|CK120152.1|CK120152
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125209567|gb|EL224521.1|EL224521
EST:     CTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124909772|gb|EH983852.1|EH983852
EST:     GAGTCTCTTCCTTCACTGTCCGAGCTGGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: GAGTCTCTTCCTTCACTGTCCGAGCT-GTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124989896|gb|EL062179.1|EL062179
EST:     TCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: TCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125197889|gb|EL212843.1|EL212843
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACG
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACG
EST: gi|125276826|gb|EL290911.1|EL290911
EST:     CACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124974997|gb|EL048522.1|EL048522
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACAATTCCAAGTAGTTCAACCAATCAACGGTGATCC
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACA-TTCCAAGTAGTTCAACCAATCAACGGTGATCC
EST: gi|152034749|gb|BP836152.2|BP836152
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124861609|gb|EH946046.1|EH946046
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGG
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGG
EST: gi|116465385|gb|EG507977.1|EG507977
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|116415456|gb|EG458048.1|EG458048
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|116465386|gb|EG507978.1|EG507978
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124768836|gb|EH858966.1|EH858966
EST:     AGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTTCAACCAATCAACGGTGATCCATTCATCGGAAG
genomic: AGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAG-TTCAACCAATCAACGGTGATCCATTCATCGGAAG
EST: gi|164130128|gb|EL991683.1|EL991683
EST:     TTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: TTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|47831221|gb|CK120905.1|CK120905
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124891370|gb|EH970272.1|EH970272
EST:     AGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGGTCCATTCATCGGAAAG
genomic: AGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAA-G
EST: gi|125029616|gb|EL101885.1|EL101885
EST:     CTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|116465393|gb|EG507985.1|EG507985
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125057618|gb|EL126738.1|EL126738
EST:     TTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: TTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125203197|gb|EL218151.1|EL218151
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAA
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAA
EST: gi|124868666|gb|EH953103.1|EH953103
EST:     CCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125176537|gb|EL195838.1|EL195838
EST:     AAATCCGACAAG                         ACAACATTCCAGGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: AAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|47830682|gb|CK120366.1|CK120366
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124796034|gb|EH885713.1|EH885713
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGG
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGG
EST: gi|125232733|gb|EL246818.1|EL246818
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGT
EST: gi|124907682|gb|EH981762.1|EH981762
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTC
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTC
EST: gi|124724170|gb|EH815572.1|EH815572
EST:     CCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTG
genomic: CCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTG
EST: gi|124929320|gb|EL006877.1|EL006877
EST:     CGACCAAAAGGGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAAGTAGTTCAACCAATCAACGGTGATCCAT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAA-GTAGTTCAACCAATCAACGGTGATCCAT
EST: gi|125082743|gb|EL143547.1|EL143547
EST:     CTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|116486347|gb|EG528939.1|EG528939
EST:     CGACCAAAAGCGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|47830547|gb|CK120231.1|CK120231
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|124768400|gb|EH858530.1|EH858530
EST:     CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAG
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAG
EST: gi|124723490|gb|EH814892.1|EH814892
EST:     TTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: TTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125266860|gb|EL280945.1|EL280945
EST:     CTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|125104242|gb|EL158378.1|EL158378
EST:     CCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACAGTGATCCATTCATCGGAAGT
genomic: CCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
EST: gi|152034426|gb|BP828289.2|BP828289
EST:     CGACCAAAAGAGTCTCTTCCTTCAGTGTCCGAGCTGTTAAATCCGACAAG                         ACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT
genomic: CGACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGgtatcttctt ... aatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagaagttatgtatagtgagtgtgctctaaccactaatatatgtaatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGTTTGGAAACTCCGGTGACATCAAGCCCATTGATCGCGTGGTACCTTTCCA
                                cactaat  putative branch site (score: 2)
                                 actaatatatgtaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatttaggttcttgatttatgcaatggcaagttatgtatagaagaaaagaagttatgtatagtgagtgtgctctaaccactaatatatgtaatttgtcagACAACATTCCAAGTAGTTCAACCAATCAACGGTGATCCATTCATCGGAAGTTTGGAAACTCCGGTGACATCAAGCCCATTGATCGCGTGGTACCTTTCCA

- - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacca