1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatcctttgttttggttacattggcaacttgagaatgttactagctttgtaaaatcaggtcttgaaaagttgttaactttgtgtgtaaaaatagaatcggtacatgatatgttttggattagccttaacttttaatccatagGTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTACAGGGATGACGATTACCTTATCTTTGATTGTCCAG
species | Arabidopsis thaliana |
transcript | AT4G12790.2 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TGGTGCCCTTATGTATTGCATGGA GTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTAEST: gi|301501514|gb|HO207054.1|HO207054
genomic: TGGTGCCCTTATGTATTGCATGGAgtatcctttg ... taatccatagGTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTA
EST: ATGGAGGATCTAAAGCTTGGTCCTAATGGTGCCCTTATGTATTGCATGGA GTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTA
genomic: ATGGAGGATCTAAAGCTTGGTCCTAATGGTGCCCTTATGTATTGCATGGAgtatcctttg ... taatccatagGTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTA
aaaatagaatcggtacatgatatgttttggattagccttaacttttaatccatagGTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTACAGGGATGACGATTACCTTATCTTTGATTGTCCAG
agccttaac putative branch site
ctttt putative PPT
ttaacttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttgttttggttacattggcaacttgagaatgttactagctttgtaaaatcaggtcttgaaaagttgttaactttgtgtgtaaaaatagaatcggtacatgatatgttttggattagccttaacttttaatccatagGTATCTTGAGGATAGCTTACATGATTGGGTGGATGAAGAATTGGAGAACTACAGGGATGACGATTACCTTATCTTTGATTGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA