1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATAGAGCTGTTTACACATGTTCCTGTGCTCAAGAACTTTGTGGAGCATTTGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAGgtattatataagttctatctcccttccactacttactccttattgtagtgaaccattttgcctaactaaagatgaatttttgtttggatcag
species | Arabidopsis thaliana |
transcript | AT4G12790.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAG TTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTCGCTEST: gi|124951233|gb|EL026623.1|EL026623
genomic: TGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAGgtattatata ... tttggatcagTTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTCGCT
EST: AAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAG TTCATCACAGATGTAACCAAGTTTATCAGTGGTTEST: gi|86085798|gb|DR381557.1|DR381557
genomic: AAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAGgtattatata ... tttggatcagTTCATCACAGATGTAACCAAGTTTATCAGTGGTT
EST: TGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAG TTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTCGCTEST: gi|164236440|gb|ES191059.1|ES191059
genomic: TGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAGgtattatata ... tttggatcagTTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTCGCT
EST: GAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAG TTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTC
genomic: GAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAGgtattatata ... tttggatcagTTCATCACAGATGTAACCAAGTTTATCAGTGGTTGCATGTCATCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGAGCTGTTTACACATGTTCCTGTGCTCAAGAACTTTGTGGAGCATTTGAAGCAGAAGAACTTCAACGTCTGTGTTGTTTATCTGCTTGATTCACAGgtattatataagttctatctcccttccactacttactccttattgtagtgaaccattttgcctaactaaagatgaatttttgtttggatcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC