Sequence
atgc intronic sequence ATGC exonic sequence...atatcgttcgaggagaataatattttttatgttgacaagtctacacatgggttaacttttatattttaatatccatctcaataaggattctttgtggtagATTGTAGTGAATGAAATTGACGAAAATGAAGAAGACAATGGTGCTTACAACAATGATGAGCTCAATCTTGGTCTCAACTCTCAAGTACTAAAGATGATTT
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G11020.1 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgggttaacttttatattttaatatccatctcaataaggattctttgtggtagATTGTAGTGAATGAAATTGACGAAAATGAAGAAGACAATGGTGCTTACAACAATGATGAGCTCAATCTTGGTCTCAACTCTCAAGTACTAAAGATGATTT
ttttaat putative branch site (score: 3)
ttctttgt putative PPT
ttttatattttaatat TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatcgttcgaggagaataatattttttatgttgacaagtctacacatgggttaacttttatattttaatatccatctcaataaggattctttgtggtagATTGTAGTGAATGAAATTGACGAAAATGAAGAAGACAATGGTGCTTACAACAATGATGAGCTCAATCTTGGTCTCAACTCTCAAGTACTAAAGATGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -agaataa
- - - - - - - - - - - - - - - - - - - - - acacatg
