1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcggaaaatttgcgttattttgacttgggtttatgagaatgtttgttaatggtctgatttattctatttctgaaccgtttggtttggcctgcaatgtagGTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCGAAACCAAGATCCAGACATTGTATGACTACGTGGATTCACTTGGACTCT
species | Arabidopsis thaliana |
transcript | AT4G10790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCTTGCTCTTGGAGAAGAACCTGAGAAAGGCCCTGATGTTACACAA GTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCEST: gi|116406052|gb|EG448644.1|EG448644
genomic: AAGCTCTTGCTCTTGGAGAAGAACCTGAGAAAGGCCCTGATGTTACACAAgtaagttcgc ... tgcaatgtagGTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGC
EST: AAGCTCTTGCTCTTGGAGAAGTACCTGAGAAAGGCCCTGATGTTACACAA GTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGC
genomic: AAGCTCTTGCTCTTGGAGAAGAACCTGAGAAAGGCCCTGATGTTACACAAgtaagttcgc ... tgcaatgtagGTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGC
gttaatggtctgatttattctatttctgaaccgtttggtttggcctgcaatgtagGTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCGAAACCAAGATCCAGACATTGTATGACTACGTGGATTCACTTGGACTCT
tgatttattctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggaaaatttgcgttattttgacttgggtttatgagaatgtttgttaatggtctgatttattctatttctgaaccgtttggtttggcctgcaatgtagGTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCGAAACCAAGATCCAGACATTGTATGACTACGTGGATTCACTTGGACTCT
- - - - - - - - - - - - - - ggtttat
- - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg