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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttcttcattaatgtaacgcttaatcaccagttttcgatactgattacttgaaaatatttattctatgtgctattatgatatatttaagGAGATTGAAGATTAGTCCAAAGGGAGACAAAAAGGTAAGAGCACTTTCAGTTTATGTACAAGCCATGGCATATCTGCCAAATGCGGTAGCTTCTAGCACT

Basic information

species Arabidopsis thaliana
transcript AT4G09770.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878877|gb|AU239708.1|AU239708
EST:     GACAAGAGATACTATTATTCAGATGAATTTGTGGTCGGAGATAGAAAATG                         GAGATTGAAGATTAGTCCAAAGGGAGACAAAAAGGT
genomic: GACAAGAGATACTATTATTCAGATGAATTTGTGGTCGGAGATAGAAAATGgtgagttttt ... tatatttaagGAGATTGAAGATTAGTCCAAAGGGAGACAAAAAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgatactgattacttgaaaatatttattctatgtgctattatgatatatttaagGAGATTGAAGATTAGTCCAAAGGGAGACAAAAAGGTAAGAGCACTTTCAGTTTATGTACAAGCCATGGCATATCTGCCAAATGCGGTAGCTTCTAGCACT
    tactgat  putative branch site (score: 2)
                 aaaatatttattctat  TA-rich tract