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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCTTGAGATGTTGATCCCTAGAAGCGCTGGCTCTTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACAgtaagttgctatagtttaatgtattatgatcatatttagaataagcttttaagtggttataggcatagaatgtattaggggatgtgattgaagcaacatgatttcttagttcattgcttttgtatctaatattttacatgttttcttgttttgtttggtaag

Basic information

species Arabidopsis thaliana
transcript AT4G08980.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163989115|gb|ES141450.1|ES141450
EST:     TCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACA                         TGCTGGTTCACTTAAGACCT
genomic: TCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACAgtaagttgct ... gtttggtaagTGCTGGTTCACTTAAGACCT
EST: gi|125306699|gb|EL320784.1|EL320784
EST:     TCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACA                         TGCTGGTTCACTTAAGACC
genomic: TCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACAgtaagttgct ... gtttggtaagTGCTGGTTCACTTAAGACC
EST: gi|116458064|gb|EG500656.1|EG500656
EST:     TCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACA                         TGCTGGTTCACTTAAGACCTTGAAGGTGCCAAGAAGTGGTCTGACTAATTC
genomic: TCCGTTACTGGCCTTCGAAATGACTCTATCTTCTCCTTCATTGCACAACAgtaagttgct ... gtttggtaagTGCTGGTTCACTTAAGACCTTGAAGGTGCCAAGAAGTGGTCTGACTAATTC