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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGgtaaagtaatgcgctttagatttaaactcacactttacaattttcaacatctcctagcaaacaaatttcaacaactcgctctaagaaattgtctttgtaatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G05020.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G05020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g26660.1 (Oryza sativa), 5'ss of exon 5
---AGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGgtaaagtaatgcgctttagatttaaactcacactttacaattttcaacatctcctagcaaac-aaatttcaacaactcgc-tctaagaaattgtctttgtaatttcag
   |   |||||| || |   |   |||||||| |||  ||| ||||| |||||||||||||| |||||  | ||||  ||||| ||||| ||| |||||||||||   ||   ||      | | | |   | |   ||||  ||||||||| |   |  |||  |  |||  | ||| |   | |||   || |               
TGCAACTGGAGAGATTGCTGTG---CCTTATGGCATGGCTGTTTGGTCCACTGGTATTGGAACCCGTCCCCTCATAATGGATTTCATGAAGCAAGTTGGTCAGgta---tatctcgtacagaactcata---agagaataca--tttcaacatattacactaaattatgtttttaaaacacttatttaatttatag---------------

upper sequence: AT4G05020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G145972_T01 (Zea mays), 5'ss of exon 1
AGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGgtaaagtaatgcgctttagatttaaactcacactttacaattttcaacatctcctagcaaacaaatttcaacaactcgctctaagaaattgtctttgtaatttcag
 |     | || |   ||  | |||||||| |||  ||||||||| ||||||||||||||||||||  |  |    || ||||||||||||||||| |||||| |         | || | || ||||  |  ||||| ||| |   |||     ||   || | | | ||||  |  ||  |  | || |               
TGCCACCGGGGATATTTCAGTCCCTTATGGGATGGCTGTCTGGTCGACTGGTATTGGAACTCGTCCATTCGTTGTGGAATTTATGAAACAAATTGGCCAGgtaga---------tataaaattcaactgtccatttactattct--gcatta---agttgacca-tctgaacatttatctgcat-atatag---------------

upper sequence: AT4G05020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G30920.2 (Glycine max), 5'ss of exon 5
AGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGgta-------aagtaatgcgct-ttaga---tttaaactcacactttacaattttcaacatctcctag----caaacaaatttcaacaactcgctctaagaaattgtctttgtaatttcag-------------------
 |||||||   || |  | ||||| |||||||||  ||||||||||||||||||||| ||||||||  | |||| ||||||||||  ||||||||||||||||         | |||  ||  ||| |   |||  | |||   ||   |||  |     |||  |||     |  ||  ||||| ||| ||  | | | |     |  || |    ||                     
TGGAGGAGCAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAGAGATTTTATGTCACAAATTGGTCAGgtatgtctttgggaaatttgccattatattgttttgattcaatattccaaatcatgtttctcttgtagtttgtattcatttttcagcaaatcaattttacattcatttattatttactcgacatgaattattctgaacag

upper sequence: AT4G05020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G06380.1 (Glycine max), 5'ss of exon 5
AGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGgtaaagtaatgcgctttagatttaaactcacactttacaattttcaacatctcctagcaaacaaatttcaacaactcgctctaagaaattgtctt--tgtaatttcag
 |||||||   || |  | ||||| |||||||||  ||||||||||||||||||||| ||||||||  | |||| ||||||||||  ||||||||||||||||      || |    | |||||   | | | ||  |    ||||| ||  |  | ||      |   |  |  | |   | |    | |  |   | ||||||   
TGGAGGAGCAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAGAGATTTTATGTCACAAATTGGTCAGgtatgtctttggg----aaatttaccattatagttgtcccgattcaatattccaaatcatgtttctggta-tagtttgtatttatttttggcttaaatataattt---

upper sequence: AT4G05020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 5
AGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGgtaaagtaatgcgctttagatttaaactcacactttacaattttcaacatctcctagcaaacaaattt--caacaactcgctctaagaaattgtctttgtaatttcag---
|   |||||| ||    | ||||| |||||||||  ||||||||||||||||||||| ||||||||  | || ||||||||||||  |||||||||||||||    || || |    | |||  || |    || | | ||||   | ||  | || ||      | |   |   | | |   |      |  | ||| |  | | |    
AAATGGAGAGATTAAGACAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGGCACAAATTGGTCAGgtgtgttattgag----aaattagaattgtatctctgctatttcataaattccatatcatgtttctctggtagtcatttgtcattcactctgctttttctcttctgaacag

upper sequence: AT4G05020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G07290.1 (Glycine max), 5'ss of exon 5
AGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGgtaaagtaatgcgct-ttagatttaaactcacactttacaattttcaacatctcctagcaaacaaatttcaacaactcgctctaagaaattgtctttgtaatttcag---------------------------------------
 ||||||||| ||    | ||||| |||||||||  ||||||||||||||||||||| ||||||||  | || |||||||| |||  |||||| ||||||||    || || |    |||||   |        | |    |  |  | |  |||  |  |      |     |  | |     |  | |   |     ||||| |                                        
CGGAGGAGAGATTAAGACAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTCATGGCACAAATCGGTCAGgtgtgttattgagaaactagatagtagtattgtatctgtgctaattcatagttccatgtcatgtttctctggtagtttgtatctatcattcagcaaataaatttaaagtcattcgtcattcgctctgttttttctcttctgaacag