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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataaaatcttgaattagactatgattggaataaatcattttcacctttttaactgatttggtttctctattgtgtatatatttagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT

Basic information

species Arabidopsis thaliana
transcript AT4G03820.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G03820.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os06g42850.1 (Oryza sativa), 3'ss of exon 2
gtaaataaaatcttgaattagacta---tgattggaataaatc-------attttcacctttt---taactgatttggtttctctattgtgtatatatttagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
     || | | ||| || || |||   |  || | || |||         | | || |||     |||   | |    |  ||  |  ||| |   |  |||||||||||| |||||||||||||| |||||||| || | ||| |||  | |||| |   | |   |||  | ||| ||||   ||||     | ||  |
-attgtacattgttgcatcagcctaaacttttttggatgaatttatcggtgtatgcaacttgacaataatgaaataaaatgttcactcatgtttg-gtgcagTGACCTATCTGGAGAACAACAGAGCGGGGATCACGGTGTTCGGGTTCACGCTGGACAGGTCCTACCTGCACACGATATTCATGCTCGAGTGGACGCTCTT

upper sequence: AT4G03820.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv00s0399g00030.t01 (Vitis vinifera), 3'ss of exon 3
gtaaataaaatcttgaattagactatgattggaataaatcattttcacctttttaactgatttggtttctctattgtgt---atatatt-tagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
            | |||| | ||||  | |    |||  || |||     | | |  |    |  |      || | ||   || |  |  ||| || |||||||||||||||||||||||||| || |||| ||| ||| || |||| |  |||||| |||  |  || ||  |  | ||  |  ||||| |
-------gtgagtggaatcaaactactaatttgttaag-cagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTTGAGATGTCTCTTGT

upper sequence: AT4G03820.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv10s0523g00050.t01 (Vitis vinifera), 3'ss of exon 3
gtaaataaaatcttgaattagactatgattggaataaatcattttcacctttttaactgatttggtttctctattgtgt---atatatt-tagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
            | |||| | ||||  | |    |||  || |||     | | |  |    |  |      || | ||   || |  |  ||| || |||||||||||||||||||||||||| || |||| ||| ||| || |||| |  |||||| |||  |  || ||  |  ||||  |  ||||| |
-------gtgagtggaatcaaactactaatttgttaag-cagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatcattttcacctttttaactgatttggtttctctattgtgtatatatttagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
                                     tattgtgtatatattt  TA-rich tract