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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGGTATTCCTTTCACCTGATTTAAAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTCAAAACTCTCCTTAAgtaagtaaaccctttttctcttattgtacaaaagcattctaggcttgtaatggtgcaataaaaaatagagtatgtatgtagaaacaaacgctcttggcgaagactatagttgattcgtttatgttctccatgttttctttgggtttggttcag

Basic information

species Arabidopsis thaliana
transcript AT4G03200.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G03200.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G36910.1 (Glycine max), 5'ss of exon 6
TGTCGGTATTCCTTTCACCTGATTTAAAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTCAAAACTCTCCTTAAgtaagtaaaccctttttctcttattgtacaaaagcattc-taggcttgtaatggtgcaataaaaaatagagtatgtatgtagaaacaaacgctcttggcg-aagactatag-ttgattcgtttatgttct--ccatgttttctttgggtttggttcag---------------------------
||   || || ||||||||||| || || || || ||||||||||| ||||| || ||  |||| || ||||||||||||||||| || ||| | |||| || ||       | || | | | |||     || |||      ||||| | |  |     |  ||||   ||   |  | |      ||     || |   || |||  ||    ||   ||||  || |    ||| ||| |   | | |  ||                              
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTATGGACGACCAGGATTTAAGACTATACTTAGgtgagag----ttattgcacatgttgacttgaatcatcaacctgcttggactcctctctgagtaaatttggtggatg-gcatgttggaatttatttagtataaaactccaggccaatggatttaaatttttattatggtttttgaagttcttatttgaatactattttgttcctgttttctccag

upper sequence: AT4G03200.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA19G39560.1 (Glycine max), 5'ss of exon 6
TGTCGGTATTCCTTTCACCTGATTTAAAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTCAAAACTCTCCTTAAgtaagta----aaccctttttctcttattgtacaaaagcattctaggcttgtaatggtgcaataaaaaataga--gtatg------tatgtagaaacaaacgctcttggcgaa--gactatagttgattcgtttatgttctccatgttttc-tttgggtttggttcag----------------
||   || || ||||||||||| || || || || ||||||||||| ||||| || ||  ||||||| ||||||||||| ||||| || ||| | |||| || ||        | | | ||  |||     |  ||     | | | ||  |   || | || |     | ||  | |||      | | | ||    ||  |||  ||| ||  || |  | ||  ||  ||   ||| |  | |||||  ||||  |   |||  |                
TGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGACAAGTATGGACGACCTGGATTTAAGACTATACTTAGgtgagagttatggcacatgttgacttgaatcatcaacctgct-tggactcttctcggagtaaaatttggtggatggcatgctggaatttattgagtataaaactccaggccaatggattgaaatt--tttattatggtttttgaagtttttatttgtatactgttttgttcctgttttctccag

upper sequence: AT4G03200.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 5'ss of exon 6
TGTCGGTATTCCTTTCACCTGATTTAAAGCCGTTGATGGGTGGAACCTACTTTCCTCCAAATGACAATTATGGACGACCAGGATTCAAAACTCTCCTTAAgtaagtaaaccctttttctcttattgta--caaaagcattctaggcttgtaatggtgcaataaaaaatagagtatgtatgtagaaacaaacgctcttggcgaagactatagttgattcgtttatgttctccatgttttctttgggtttggttcag
||   || ||||||||||||||||| || || |||||||||||||| |||||||| ||  |||| || |||||| |||| || || || ||| | |||| || || | |   |  | |    | | ||      |   || |    || || ||       | |        |   |||||   |       || |     | | | ||  |||  |   |  ||  |    | || |   ||  ||   |||||
TGAGTGTCTTCCTTTCACCTGATTTGAAACCTTTGATGGGTGGAACTTACTTTCCCCCGGATGATAAGTATGGAAGACCTGGGTTTAAGACTGTTCTTAGgtgaggacattttcgtccctaaactttaatttctatggttttgaaattttagtgacagtggatattccttgattgttatgtgagatttgtaactttgtagaatgtcaatttttgtgtttgtcttggccattctcttatacctgtattct-ttcag