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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcggttccaaccaaatacaaaaacaatcttttctttggctgcaagttatatctcatagtagtaagtagctttggtttgttttttgttgttgtctgattttcaatatagGAACTTGAGAGTGTTGGAACTACGAGAGTGTATTGTTGAAGATTTAGGAGGAGATTGGCTTAGCTATTTTCCAGAGAGTTCAACTTCTTTGGTCTCTCTT

Basic information

species Arabidopsis thaliana
transcript AT4G03190.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124867699|gb|EH952136.1|EH952136
EST:     CTACTGATGGTATCGCTGCTATTGCAGCTACTTGCAG                         GAACTTGAGAGTGTTGGAACTACGAGAGTGTATTGTTGAAGATTTAGGAGG
genomic: CTACTGATGGTATCGCTGCTATTGCAGCTACTTGCAGgttcggttcc ... ttcaatatagGAACTTGAGAGTGTTGGAACTACGAGAGTGTATTGTTGAAGATTTAGGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagtagtaagtagctttggtttgttttttgttgttgtctgattttcaatatagGAACTTGAGAGTGTTGGAACTACGAGAGTGTATTGTTGAAGATTTAGGAGGAGATTGGCTTAGCTATTTTCCAGAGAGTTCAACTTCTTTGGTCTCTCTT
                                     gtctgat  putative branch site (score: 4)
                                           ttttc  CT-rich tract
                                        tgattttcaatata  TA-rich tract