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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctcctctagttttgttgttatttcttttcttttcatttggtatcatctaatacattttacaaaaccgaaataaaattgtgatgttttgcagGGTTTTCGTCGACTGAAGCACATTAATCTGTCGAGTTCGCCTGAAATTAGTGGTTGCTTTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G02760.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082755|gb|DR378514.1|DR378514
EST:     CGCTCCTAGGTTTTCTGCTAAATGACGCAATATTACAAAAATTAATTAAG                         GGTTTTCGTCGACTGAAGCACATTAATCTGTCGAGTTCGCCTGAAATTAGT
genomic: CGCTCCTAGGTTTTCTGCTAAATGACGCAATATTACAAAAATTAATTAAGgtatggctcc ... tgttttgcagGGTTTTCGTCGACTGAAGCACATTAATCTGTCGAGTTCGCCTGAAATTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtatcatctaatacattttacaaaaccgaaataaaattgtgatgttttgcagGGTTTTCGTCGACTGAAGCACATTAATCTGTCGAGTTCGCCTGAAATTAGTGGTTGCTTTTTCAG
        atctaat  putative branch site (score: 3)
           taatacattttacaaa  TA-rich tract