1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTTTACTGAAAATCGGGATTCGAGGTGTTACTGTTTCTGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTGgtacgtccgtgaattcaagaattggtttgatgattcttcttattgtcaaaatgtgttcatgacttttctatacacattgttgcatttgcag
species | Arabidopsis thaliana |
transcript | AT4G01900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGAGACACGGTG GCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAAATCGEST: gi|124713999|gb|EH805401.1|EH805401
genomic: GAGAGACACGGTGgtacgtccgt ... gcatttgcagGCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAAATCG
EST: TGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGGCACGGTG GCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAEST: gi|124866732|gb|EH951169.1|EH951169
genomic: TGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTGgtacgtccgt ... gcatttgcagGCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGA
EST: AGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTG GCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAAATCGEST: gi|125023901|gb|EL096170.1|EL096170
genomic: AGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTGgtacgtccgt ... gcatttgcagGCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGATGGAAATCG
EST: TGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTG GCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGAEST: gi|124771550|gb|EH861680.1|EH861680
genomic: TGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTGgtacgtccgt ... gcatttgcagGCTCTGAGTTCTCGGAAGACAAATTTGTTGCTAAAGTTAAGA
EST: TGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTG GCTCTGAGTTCT
genomic: TGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTGgtacgtccgt ... gcatttgcagGCTCTGAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTACTGAAAATCGGGATTCGAGGTGTTACTGTTTCTGATGTGAGAGGGTTTGGTGCACAAGGAGGTTCTACCGAGAGACACGGTGgtacgtccgtgaattcaagaattggtttgatgattcttcttattgtcaaaatgtgttcatgacttttctatacacattgttgcatttgcag
- - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG