1 5' 3' | 2 5' 3' | 3 5' 3' |
...gggttaatgggtcgtcattattttgctctgttgattcccatttcgttctctatctccgattattctttcttgttatcacaaagcttctttgttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTGCTCAAAG
species | Arabidopsis thaliana |
transcript | AT4G00310.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAG TTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTEST: gi|116400401|gb|EG442993.1|EG442993
genomic: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGgtaattcaat ... gttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
EST: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAG TTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
genomic: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGgtaattcaat ... gttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
ttctctatctccgattattctttcttgttatcacaaagcttctttgttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTGCTCAAAG
tgttaac putative branch site (score: 2)
cttctttgtt CT-rich tract
attattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttaatgggtcgtcattattttgctctgttgattcccatttcgttctctatctccgattattctttcttgttatcacaaagcttctttgttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTGCTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - ttgctct
- - - - - - - - - - - - - - - - -attccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaaa