Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116400405|gb|EG442997.1|EG442997EST: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAG TTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
genomic: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGgtaattcaat ... gttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
EST:
gi|116400403|gb|EG442995.1|EG442995EST: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAG TTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
genomic: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGgtaattcaat ... gttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
EST:
gi|116400401|gb|EG442993.1|EG442993EST: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAG TTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
genomic: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGgtaattcaat ... gttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
EST:
gi|116400399|gb|EG442991.1|EG442991EST: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAG TTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
genomic: TCCCTTTATCGTCTTCGTCTTCTTCTTCTTCTCCGCCTCTCATTCACAAGgtaattcaat ... gttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctctatctccgattattctttcttgttatcacaaagcttctttgttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTGCTCAAAG
tgttaac putative branch site (score: 2)
cttctttgtt CT-rich tract
attattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggttaatgggtcgtcattattttgctctgttgattcccatttcgttctctatctccgattattctttcttgttatcacaaagcttctttgttaactcagTTCATTGGAGAAGAAGATAGCTTCAATGGGAATGTGAGTTTGGGAGATTGTAATGACACTGCTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT