1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtccatttgcttttcgatgtttaggattttctgtgcttatttgaatcaccttgtatcttgtatttctccttgtaatttagcacatcatctgcactgcagCAATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTGGGGATCCCGTTCAACGGATTGTCATTGAG
species | Arabidopsis thaliana |
transcript | AT3G63400.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGTTTCATATCTCCGTCTCCGGCTCGATCCGCCAAGTAGAGTAAGCAG CAATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTG
genomic: CTCGTTTCATATCTCCGTCTCCGGCTCGATCCGCCAAGTAGAGTAAGCAGgtatctccga ... tgcactgcagCAATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTG
atcaccttgtatcttgtatttctccttgtaatttagcacatcatctgcactgcagCAATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTGGGGATCCCGTTCAACGGATTGTCATTGAG
ttgtaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtccatttgcttttcgatgtttaggattttctgtgcttatttgaatcaccttgtatcttgtatttctccttgtaatttagcacatcatctgcactgcagCAATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTGGGGATCCCGTTCAACGGATTGTCATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - tgtttag
- - - - - - - - - - - - - - - - - - - - - - aatcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacatc