Sequence
atgc intronic sequence ATGC exonic sequence...aatatcaaggaaatctcaaatatatctgtgacccctataataatgctgtatgattttggaatccatggcactataataccaacctgatgtgactgtacagGTAAGGAGGGGTGCGGATAGAGCAGAGATCTACAGTTTGGCCTTCTCTTCAAATGCTCAGTGGTTAGCTGTCTCAAGTGACAAAGGAACGGTCCATGTCT
Basic information
species | Arabidopsis thaliana |
transcript | AT3G62770.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125113929|gb|EL164567.1|EL164567EST: TACTCTGGTTCGGATCTTCAATACTGTTGATTGGTACCTTGCGTCAAGAG GTAAGGAGGGGTG
genomic: TACTCTGGTTCGGATCTTCAATACTGTTGAT-GGTACCTTGCGTCAAGAGgtacgctttt ... gactgtacagGTAAGGAGGGGTG
EST:
gi|125088501|gb|EL147234.1|EL147234EST: GTACTCTGGTTCGGATCTTCAATACTGTTGATGGTACCTTGCGTCAAGAG GTAAGGAGGGGTGCGGACTAGAGCAGAGATCTACAGTTCGGCCTT
genomic: GTACTCTGGTTCGGATCTTCAATACTGTTGATGGTACCTTGCGTCAAGAGgtacgctttt ... gactgtacagGTAAGGAGGGGTGCGGA-TAGAGCAGAGATCTACAGTTTGGCCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtatgattttggaatccatggcactataataccaacctgatgtgactgtacagGTAAGGAGGGGTGCGGATAGAGCAGAGATCTACAGTTTGGCCTTCTCTTCAAATGCTCAGTGGTTAGCTGTCTCAAGTGACAAAGGAACGGTCCATGTCT
acctgat putative branch site (score: 4)
actataata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatatcaaggaaatctcaaatatatctgtgacccctataataatgctgtatgattttggaatccatggcactataataccaacctgatgtgactgtacagGTAAGGAGGGGTGCGGATAGAGCAGAGATCTACAGTTTGGCCTTCTCTTCAAATGCTCAGTGGTTAGCTGTCTCAAGTGACAAAGGAACGGTCCATGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -caaggaa
- - - - - - -tctcaaa
- - - - - - - - - - - - - - - accccta
- - - - - - - - - - - - - - - - - - - - - - - - - -gattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacct