1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTGGTCGGTGGCTCAGTTCAGGTTGGTTGAAGGAACTCAGTACATAGCCGCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCATGGATGGGAGgtaagcaaacattattccattgacaaactttaatcacgaaattgcaattgagaacctgacaaacataattctctatgatttgttctgtgtatggcatatttgatctgaccggagttggattgtgttcctttgatgttcttaaacag
species | Arabidopsis thaliana |
transcript | AT3G62770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCATGGATGGGAG CTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGTGAAATGTCTCAGCTEST: gi|124829149|gb|EH913814.1|EH913814
genomic: GCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCATGGATGGGAGgtaagcaaac ... tcttaaacagCTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGTGAAATGTCTCAGCT
EST: GGCCATCAAAAGAACACCGTTGTTATTCTTGGCATGGATGGGAG CTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGTGAAATGTCTCAG
genomic: GGCCATCAAAAGAACACCGTTGTTATTCTTGGCATGGATGGGAGgtaagcaaac ... tcttaaacagCTTCTACAGATGCCAGTTTGATCCGGTGAACGGCGGTGAAATGTCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGGTCGGTGGCTCAGTTCAGGTTGGTTGAAGGAACTCAGTACATAGCCGCCTTTGGCCATCAAAAGAACACCGTTGTTATTCTTGGCATGGATGGGAGgtaagcaaacattattccattgacaaactttaatcacgaaattgcaattgagaacctgacaaacataattctctatgatttgttctgtgtatggcatatttgatctgaccggagttggattgtgttcctttgatgttcttaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA