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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAGgtgaggtttgatttcgtatttctcactttcgtcagtgtttttggttgcttgacatggtttcgttagggttttagatatcttaagcttagaaacaattgcatttgagtttcttcttgttggtag

Basic information

species Arabidopsis thaliana
transcript AT3G62620.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059010|gb|DR354767.1|DR354767
EST:     GTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAG                         ATTCAGTGATGGAAATCGGATTCTGAATAGCTTGAAATTATCTGGAAATGG
genomic: GTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAGgtgaggtttg ... ttgttggtagATTCAGTGATGGAAATCGGATTCTGAATAGCTTGAAATTATCTGGAAATGG
EST: gi|86059011|gb|DR354768.1|DR354768
EST:     GTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAG                         ATTCAGTGATGGAAATCGGATTCTGAATAGCTTGAAATTATCTGTAAATGG
genomic: GTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAGgtgaggtttg ... ttgttggtagATTCAGTGATGGAAATCGGATTCTGAATAGCTTGAAATTATCTGGAAATGG
EST: gi|163966802|gb|ES000019.1|ES000019
EST:     GTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAG                         ATTCAGTGATGGAAATCGG
genomic: GTGAAATTGCAGCGATTTCGAAGCGTATTTCACAAGATAGgtgaggtttg ... ttgttggtagATTCAGTGATGGAAATCGG