1 5' 3' | 2 5' 3' | 3 5' 3' |
ACTAAGATCTGATGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatttttatttttaattaatatatgacacgtaggcaaattcttttttgggtccgtgtctcacatttaattagcgaacggtgctacatcattaacgtaacggttgttggtatacgtaacgtagatgtcaagttaggttaatgagtgctctgttttgtttttgttttacacag
species | Arabidopsis thaliana |
transcript | AT3G59480.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCT GCTAAGGTGTTCCACTACGGATCCATAAGCTTGATCGTTGAGCCATGTCGAEST: gi|86040723|gb|DR336478.1|DR336478
genomic: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatt ... ttttacacagGCTAAGGTGTTCCACTACGGATCCATAAGCTTGATCGTTGAGCCATGTCGA
EST: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCT GCTAAGGTGTTCCACTACGGATCCATAAGCTTGATCGTTGAGCCATGTCGAEST: gi|86040728|gb|DR336483.1|DR336483
genomic: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatt ... ttttacacagGCTAAGGTGTTCCACTACGGATCCATAAGCTTGATCGTTGAGCCATGTCGA
EST: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCT GCTAAGGTGTTEST: gi|86040720|gb|DR336475.1|DR336475
genomic: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatt ... ttttacacagGCTAAGGTGTT
EST: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCT GCTAAGGTGTTCCACTACGGATCCATAAGCTTGATCGTTGAGCCATGTCGA
genomic: CCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatt ... ttttacacagGCTAAGGTGTTCCACTACGGATCCATAAGCTTGATCGTTGAGCCATGTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAAGATCTGATGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatttttatttttaattaatatatgacacgtaggcaaattcttttttgggtccgtgtctcacatttaattagcgaacggtgctacatcattaacgtaacggttgttggtatacgtaacgtagatgtcaagttaggttaatgagtgctctgttttgtttttgttttacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA