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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATGAGATAGAAGACCGCGAAGTTCCTAAAGCATATATTGAAGATGAACGTCCACCATTCAATGCTCCAACAAAATCATATCCTTTCGGGTTACAAGAgtaagtttgtcgaaaaagtgtcctgtttttgaaaccaacattcgttcatggctcctctctgaaagtcttaaaatctctatctatttgccag

Basic information

species Arabidopsis thaliana
transcript AT3G58760.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G58760.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA14G03040.1 (Glycine max), 5'ss of exon 10
TTCATGAGATAGAAGACCGCGAAGTTCCTAAAGCATATATTGAAGATGAACGTCCACCATTCAATGCTCCAACAAAATCATATCCTTTCGGGTTACAAGAgtaagtttgtcgaaaaagtgt--cctgtttttgaaaccaacattcg--ttcatggctcctctct-----gaaagtcttaaaatctctatctatttgccag--------------------
||  ||  |    |||    |||||||||||||||||| ||||| |||| ||||||||||| |  ||| || ||||    ||| |||  ||| || || ||||||  | |  ||    | |     |     ||    ||  |||   ||||   |    | |      |||| |   | |||   | | |      |||                    
TTTTTGCAAAGCCAGAAAATGAAGTTCCTAAAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGGCTAAAACAgtaagggttttaaatgcatttaattggcagcagatttgaatgttcagtttcaaaacctaccacaagtaggaaattgaaagaataagtttttcacattcaggaaatttgatttgtccatag

upper sequence: AT3G58760.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA02G45770.1 (Glycine max), 5'ss of exon 10
TTCATGAGATAGAAGACCGCGAAGTTCCTAAAGCATATATTGAAGATGAACGTCCACCATTCAATGCTCCAACAAAATCATATCCTTTCGGGTTACAAGAgtaagtttgtcgaaaaagtgtcct--------gtttttgaaaccaacattcgtt-catggctcctctctgaaagtcttaaaatctctatctatttgccag--------------------
|| |||| |     ||    |||||||| ||||||||| ||||| |||| ||||||||||| |  ||| || ||||    ||| |||  ||  || || ||| ||| | |  || |  | |  |        | |||| |     |  |||    | |  | |   |  |||| |   | |||    || |      |||                    
TTTATGAAAAGCCTGAAAATGAAGTTCCCAAAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGACTAAAACAgtgagtgttttaaatacattttattggcagcagattttaaggtttagtttcaaaacctaccacgagtaggaaattaaaagaataaaaattttacattcaggaaatttgatttttccatag