1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctatttatccgcaaatcactgtgttttccatatgtgtcttagattgattagtagtgttggttatctttaacaccttggttgtgtatggttttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGAGAAGAAGCTGACTCAGTCCCAACTTGCCCAT
species | Arabidopsis thaliana |
transcript | AT3G58680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060848|gb|DR356605.1|DR356605
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060834|gb|DR356591.1|DR356591
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060837|gb|DR356594.1|DR356594
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86080667|gb|DR376424.1|DR376424
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060841|gb|DR356598.1|DR356598
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060833|gb|DR356590.1|DR356590
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060836|gb|DR356593.1|DR356593
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|47830185|gb|CK119869.1|CK119869
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060844|gb|DR356601.1|DR356601
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060840|gb|DR356597.1|DR356597
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060842|gb|DR356599.1|DR356599
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: NACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAANTGAAGAAAGCCATCATGCAAGCTEST: gi|86060846|gb|DR356603.1|DR356603
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCT
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|47831590|gb|CK121274.1|CK121274
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|164076146|gb|ES209217.1|ES209217
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: GCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060839|gb|DR356596.1|DR356596
genomic: GCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGEST: gi|86060849|gb|DR356606.1|DR356606
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
EST: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTC ATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
genomic: CACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttatt ... ttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGG
gattagtagtgttggttatctttaacaccttggttgtgtatggttttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGAGAAGAAGCTGACTCAGTCCCAACTTGCCCAT
ctttaac putative branch site (score: 3)
ttatctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatttatccgcaaatcactgtgttttccatatgtgtcttagattgattagtagtgttggttatctttaacaccttggttgtgtatggttttgaaatcagATGATCGTGTGCCCACTGAATTGAAGAAAGCCATCATGCAAGCTAGAGGGGAGAAGAAGCTGACTCAGTCCCAACTTGCCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - -caaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacct