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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagccttcttctaagaatcgatatcttatatctgctagtgtagtgtagtgaaatcaggattatcatgatgatctcttttgaaatagaaattcaagtcttagattcagatacatatgtgcatcttgttgaagtaattttccccccaatgtgtgttttcagGTCAGGGAACTTGCAAATATCCTTCGAG

Basic information

species Arabidopsis thaliana
transcript AT3G58100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077449|gb|DR373206.1|DR373206
EST:     CGAAGCTTGCAATTTCAACAATAACGCTGCTCTTACTTCACTCAATCCAA                         GTCAGGGAACTTGCAAATATCCTTCGAG
genomic: CGAAGCTTGCAATTTCAACAATAACGCTGCTCTTACTTCACTCAATCCAAgtaaaaagcc ... gtgttttcagGTCAGGGAACTTGCAAATATCCTTCGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatacatatgtgcatcttgttgaagtaattttccccccaatgtgtgttttcagGTCAGGGAACTTGCAAATATCCTTCGAG
                                              tgttttc  CT-rich tract
                        aagtaatttt  TA-rich tract