Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttttcttttaccgtttagcttcagtactctggtaatttgtttgcagggttgagttatctatggcttcgaatatcttggggtctgctttatagcctaacattcttcgaatacagctagctttctcttgtgtagatagCTTGTAGAAACAGACATGTTTTGTTCGATATTGAGCTTATACAGTGATTGCTTTTCAAATGTTCGTGGAATTTATAAGTCAGGACTTAGGAATACTCTGG

Basic information

species Arabidopsis thaliana
transcript AT3G55380.2
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctttatagcctaacattcttcgaatacagctagctttctcttgtgtagatagCTTGTAGAAACAGACATGTTTTGTTCGATATTGAGCTTATACAGTGATTGCTTTTCAAATGTTCGTGGAATTTATAAGTCAGGACTTAGGAATACTCTGG
          gcctaac  putative branch site (score: 2)
                                    ctttctcttgt  putative PPT
             taacatt  TA-rich tract