1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taatgacttgttttcctcgtctgctgtttattcatagtgatgaatttgttatggtaccaatatttacattgcattgaaacttttatctctctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTTTCACCACCAACTGTGACGTTTACCTCGGAGATGTGGCATCCTAATG
species | Arabidopsis thaliana |
transcript | AT3G55380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTEST: gi|124943084|gb|EL019293.1|EL019293
genomic: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
EST: AGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTACCCAGTEST: gi|86066037|gb|DR361794.1|DR361794
genomic: AGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
EST: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTEST: gi|86066034|gb|DR361791.1|DR361791
genomic: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
EST: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTEST: gi|86066036|gb|DR361793.1|DR361793
genomic: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
EST: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCNGTEST: gi|86066040|gb|DR361797.1|DR361797
genomic: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
EST: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTEST: gi|86066035|gb|DR361792.1|DR361792
genomic: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
EST: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTEST: gi|86066038|gb|DR361795.1|DR361795
genomic: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
EST: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTA TGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
genomic: AACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTAgtgcgtttct ... ctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGT
ttgttatggtaccaatatttacattgcattgaaacttttatctctctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTTTCACCACCAACTGTGACGTTTACCTCGGAGATGTGGCATCCTAATG
ctctgat putative branch site (score: 4)
cttttatctctct CT-rich tract
attgaaacttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgacttgttttcctcgtctgctgtttattcatagtgatgaatttgttatggtaccaatatttacattgcattgaaacttttatctctctgattgcagTGAAGGTGGCTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTTTCACCACCAACTGTGACGTTTACCTCGGAGATGTGGCATCCTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - ctgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -accaata