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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTCCGCGATTACGATGATGGGCTTATTGATATTACTAGACAAAGCACGGATATTACTGTTTCTAGgtgaggtttgatgattttggatggttatggttagggtaatgtatgctcttgactggtgcttaatgttgcttctggtttctacag

Basic information

species Arabidopsis thaliana
transcript AT3G55140.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55140.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G38490.1 (Glycine max), 5'ss of exon 2
CAAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTCCGCGATTACGATGATGGGCTTATTGATATTACTAGACAAAGCACGGATATTACTGTTTCTAGgtgaggtt----tgatgattttggatggt--tatggttagggtaatgtatgctcttgactggtgcttaatgt-tgcttctggtttctacag---------
|||| ||||| || || ||||||||||| || |  || || |||||||||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||| | ||    |    |||||  || ||  ||   |   |||     |     | ||||  |  | | ||  |     |    | | ||          
CAAATTCTAGGCATATATGGATTGATCGATGCACCCTTCGTGATTACGATGATGGCCTCATAGACATTACAAGACAAAGCACCGATATCACTGTATCTAGgtgggcttattttctccattttcaattgtattacaatagtggtttgtcacatattcgactcctattaagtgagtaagggtaacgtatgcaatctcagttg

upper sequence: AT3G55140.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv00s0317g00150.t01 (Vitis vinifera), 5'ss of exon 2
CAAAGTCTAGACACATTTGGATTGATCGGTGTAGTCTCCGCGATTACGATGATGGGCTTATTGATATTACTAGACAAAGCACGGATATTACTGTTTCTAGgtgaggtttgatgattttggatggtta--tggttagggtaatgtatgctcttgactggtgcttaatg--ttgcttctggtttctacag
|||| ||||||||||| ||||| || || || || || |  ||||| |||||||| ||||| ||||| ||  | |||||||| |||||||| ||||||||||| |  ||| |  ||    ||    |  ||  | |  || ||   ||       |||    | |||  |  ||| ||| | | |   
CAAATTCTAGACACATATGGATAGACCGATGCAGCCTGCATGATTATGATGATGGACTTATAGATATCACCCGCCAAAGCACAGATATTACAGTTTCTAGgtggg--ttggttcttgcatatcacaaattgaattgaatattgcgagcgaa-agttggactctgatggatcacttttggctaccag--