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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtagttggtttctttaaatagcacttggtctcatgtgagattctttgtcttcttctgatgatctttctctcttttttttcctactttcttaaacagcagACTTGCTCTATATGCTTGAACAAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCGGAGTGCTCGCACATGTTTCATTTTCATTGCATTGCTTCGA

Basic information

species Arabidopsis thaliana
transcript AT3G54780.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875946|gb|AU236777.1|AU236777
EST:     CTTCTTCTTACCGTCGAAGGTTGTCCAGAAGTAGCAGCAAATCGTCAAAG                         ACTTGCTCTATATGCTTGAACAAGATGAAAGAAGGTTGTGGACATGCAATT
genomic: CTTCTTCTTACCGTCGAAGGTTGTCCAGAAGTAGCAGCAAATCGTCAAAGgtttgtttca ... taaacagcagACTTGCTCTATATGCTTGAACAAGATGAAAGAAGGTTGTGGACATGCAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcttcttctgatgatctttctctcttttttttcctactttcttaaacagcagACTTGCTCTATATGCTTGAACAAGATGAAAGAAGGTTGTGGACATGCAATTTTCACAGCGGAGTGCTCGCACATGTTTCATTTTCATTGCATTGCTTCGA
        ttctgat  putative branch site (score: 3)
       cttctgatgatctttc  CT-rich tract
                         tctttttttt  TA-rich tract