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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCGGTTATGGACAGCCCGGACGGCCCAAATCGGGCGGGTATGAGAGGATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCACCTCCGGATGgtatgttcatccctctcgtaataatcgttgttctagcattactagagagtgtctaggcttcttagctctgcctcaacggaattatcttgagatttattct...

Basic information

species Arabidopsis thaliana
transcript AT3G54680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075369|gb|DR371126.1|DR371126
EST:     ATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCACCTCCGGATG                         ATGAGCTTGCTGGGATGATGCCTAGTTAACTCACTCGATGATGGAGGTGGA
genomic: ATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCACCTCCGGATGgtatgttcat ... gtctgtgcagATGAGCTTGCTGGGATGATGCCTAGTTAACTCACTCGATGATGGAGGTGGA
EST: gi|125086005|gb|EL145636.1|EL145636
EST:     ATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCACCTCCGGATG                         ATGAGCTTGCTGGGATGATGCCTAGTTAACT
genomic: ATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCACCTCCGGATGgtatgttcat ... gtctgtgcagATGAGCTTGCTGGGATGATGCCTAGTTAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCGGTTATGGACAGCCCGGACGGCCCAAATCGGGCGGGTATGAGAGGATCCGTACGGATCCGAGAATAACCGGAAACCGACCCGGCACCTCCGGATGgtatgttcatccctctcgtaataatcgttgttctagcattactagagagtgtctaggcttcttagctctgcctcaacggaattatcttgagatttattct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctcg
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