1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatactagatagctttcttatttcccgcttcttgtgatatgtacctggatgaaatgtttttcagttagtggataatgggattattttgaaattatctagGCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTCCCACAACAAGCACGCAAAAGAAACCTGATGTTCCAGCCAGACAAACTAG
species | Arabidopsis thaliana |
transcript | AT3G54620.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAAACAAGCTCAAG GCTCCATTGTGGCACAAACTTCACCTGGTGCTTCATCTGTTAGATTTTCTCEST: gi|86058664|gb|DR354421.1|DR354421
genomic: CAAAAACAAGCTCAAGgtcacgtatc ... aattatctagGCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTC
EST: GAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAG GCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTCEST: gi|86058666|gb|DR354423.1|DR354423
genomic: GAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAGgtcacgtatc ... aattatctagGCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTC
EST: GAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAG GCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTCEST: gi|86058659|gb|DR354416.1|DR354416
genomic: GAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAGgtcacgtatc ... aattatctagGCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTC
EST: GAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCNNNNNNN-GCTCAAG GCTCCATTGTGGCACAAACCTCACC
genomic: GAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAGgtcacgtatc ... aattatctagGCTCCATTGTGGCACAAACCTCACC
ctggatgaaatgtttttcagttagtggataatgggattattttgaaattatctagGCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTCCCACAACAAGCACGCAAAAGAAACCTGATGTTCCAGCCAGACAAACTAG
attattttgaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatactagatagctttcttatttcccgcttcttgtgatatgtacctggatgaaatgtttttcagttagtggataatgggattattttgaaattatctagGCTCCATTGTGGCACAAACCTCACCTGGTGCTTCATCTGTTAGATTTTCTCCCACAACAAGCACGCAAAAGAAACCTGATGTTCCAGCCAGACAAACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA