1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGCTCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatcaatacataaaacaaaatagtgaatatttgtaaagttgttagaaacttatagggccagttctttatggacag
species | Arabidopsis thaliana |
transcript | AT3G54530.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAA TCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGTEST: gi|116440433|gb|EG483025.1|EG483025
genomic: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatca ... ttatggacagTCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
EST: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAA TCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGTEST: gi|116440439|gb|EG483031.1|EG483031
genomic: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatca ... ttatggacagTCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
EST: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAA TCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGTEST: gi|116440446|gb|EG483038.1|EG483038
genomic: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatca ... ttatggacagTCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
EST: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAA TCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGTEST: gi|116440440|gb|EG483032.1|EG483032
genomic: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatca ... ttatggacagTCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
EST: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAA TCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGTEST: gi|116440442|gb|EG483034.1|EG483034
genomic: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatca ... ttatggacagTCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
EST: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAA TCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGTEST: gi|116440444|gb|EG483036.1|EG483036
genomic: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatca ... ttatggacagTCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
EST: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAA TCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
genomic: AGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatca ... ttatggacagTCAGACAGGTATATGTACTACATTGCTTTTCAACGTCCAGGACATCACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTCATTTGGGCGTTCATCATTTGCAGAAGCAAAGAAGCGATTGGAAAAGCTCGAGCAAGATTATCAACACACCTACGAGAAGTACACAGAACTACAAgtaagcatcaatacataaaacaaaatagtgaatatttgtaaagttgttagaaacttatagggccagttctttatggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT