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gtaatacagcaaatttctcctctttactcatgggcttatttcttaaaactaagaaatgtgatgatgtctgttttcctctagATTGTGACGAATGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGAATATTTTGCAAGACAGAATACATTTTGCAAGAAAAAATGAAAAAGGAT
species | Arabidopsis thaliana |
transcript | AT3G54530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAG ATTGTGACGAATGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGEST: gi|116435774|gb|EG478366.1|EG478366
genomic: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGgtaatacagc ... tttcctctagATTGTGACGAATGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAG
EST: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAG ATTGTGACGAATGTACACAGAGAGTTAGEST: gi|116435775|gb|EG478367.1|EG478367
genomic: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGgtaatacagc ... tttcctctagATTGTGACGAATGTACACAGAGAGTTAG
EST: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAG ATTGTGACGAATGTACACAGAGAGTTAGEST: gi|116435776|gb|EG478368.1|EG478368
genomic: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGgtaatacagc ... tttcctctagATTGTGACGAATGTACACAGAGAGTTAG
EST: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAG ATTGTGACGAATGTACACAGAGAGTTAG
genomic: ACCTCACGAGTCTGGACAATATGAAAAATTCTACAAGTGACTTAATAAAGgtaatacagc ... tttcctctagATTGTGACGAATGTACACAGAGAGTTAG
ctcatgggcttatttcttaaaactaagaaatgtgatgatgtctgttttcctctagATTGTGACGAATGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGAATATTTTGCAAGACAGAATACATTTTGCAAGAAAAAATGAAAAAGGAT
tgtctgttttcctct CT-rich tract
ttatttcttaaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacagcaaatttctcctctttactcatgggcttatttcttaaaactaagaaatgtgatgatgtctgttttcctctagATTGTGACGAATGTACACAGAGAGTTAGAGAAAGAGAAAATAGAGTTAGAGAATATTTTGCAAGACAGAATACATTTTGCAAGAAAAAATGAAAAAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA