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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACGGTGTCAAAACCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatccgaatcaacaatacatttttgttcaaagactctttggcaaagacaataactaatggtggttttgttgaaataaaaag

Basic information

species Arabidopsis thaliana
transcript AT3G53990.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402197|gb|EG444789.1|EG444789
EST:     CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
genomic: CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
EST: gi|124975387|gb|EL048889.1|EL048889
EST:     CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATA
genomic: CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATA
EST: gi|164208198|gb|EL975068.1|EL975068
EST:     CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGT
genomic: CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGT
EST: gi|116458737|gb|EG501329.1|EG501329
EST:     CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
genomic: CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
EST: gi|47828449|gb|CK118133.1|CK118133
EST:     CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
genomic: CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
EST: gi|124743491|gb|EH834653.1|EH834653
EST:     GACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
genomic: GACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
EST: gi|125216934|gb|EL231017.1|EL231017
EST:     GACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
genomic: GACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
EST: gi|164118276|gb|ES178796.1|ES178796
EST:     CGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
genomic: CGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
EST: gi|124706705|gb|EH798107.1|EH798107
EST:     CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAG
genomic: CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAG
EST: gi|124744552|gb|EH835714.1|EH835714
EST:     TTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
genomic: TTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATGCAAGAGAGAAGCTTGTT
EST: gi|163970867|gb|ES095623.1|ES095623
EST:     CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAG                         GTGCATGTAGTGACCAAGTTATACTGGGGAGATG
genomic: CCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAGGCAGAAAGAGgtttttatcc ... aaataaaaagGTGCATGTAGTGACCAAGTTATACTGGGGAGATG