Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctccttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcat...

Basic information

species Arabidopsis thaliana
transcript AT3G52560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G071010_T01 (Zea mays), 5'ss of exon 2
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctccttcgtcttcatatatgttaacaattgttttg-agaagcatagattaatattatttgcatctcat----
 ||||| || ||||| |||||||| ||||||||||||||||||||||  ||||||||||| ||||| || |||||||| |||||||| || |||||||| ||    | |   | |  |    ||  | | |||  || | | ||| || ||  ||||   | |    | | ||      | || || || ||   |   |     
AGAGAAGGGCATTGGTGATGGAACAGTGAGCTATGGAATGGATGATGCCGATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacacaatctcatc---ctctttatatttcccgt-gcctttattta-attaaggttagacacgcacaactgccaactactagtactttgctgcaactacc

upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G027378_T01 (Zea mays), 5'ss of exon 2
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctccttcgtcttcatatatgttaacaattgttttg-agaagcatagattaatattatttgcatctcat----
 ||||| || ||||| ||||| || ||||||||||||||||||||||  ||||||||||| ||||| || |||||||| |||||||| || |||||||| ||    | |   | |     |||  ||     | ||||  | ||| || ||  ||||   | |    | | ||      | || || || |    |   ||    
AGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATCTACATGCGGTCATGGACTGGTACCATCATTGGCCCTCACAATgtgagaacacaatctc----atcctctttatctttcctgtgcctttattta-attaaggttaggcacgcacaactgccaactactagtactctgctgcaattata

upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G35790.1 (Glycine max), 5'ss of exon 2
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagtta--tatctttttctttatctgctaacattctccttcgtcttcatatatgttaac--aattgt-tttgagaagcatagattaatattatttgcatctcat
 || ||||| || || |||||||| || |||||||||||||||||||| || ||||| || ||||| ||||||||||| ||||| || || ||  | || |||  ||  ||||| || ||   |    |    || ||  ||   |   |  ||| |||   |  ||| ||| |   | |      ||| ||   || |||    
AGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGCCCCTATAATgtaaatatttatctattactgccttgattttttttttctatcaaatatgtgcatgctaaatgagctgtattttatttgaaccagcgaatttt-catgtatc----

upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G38450.1 (Glycine max), 5'ss of exon 2
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctccttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcat--
 || ||||| || || ||||| || || || ||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| || |||||  | || |||  ||| | | |  |  |  ||       || | ||||   |   |  ||||||| |   | | |        |  | || |   |||| ||| |     
AGAAAAAGGAATAGGAGATGGCACAGTTAGTTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGTCCCTATAATgtaaatatttatctaacactgccttgatttttttttcttcaaatatgtgcatgttaa-atgagctgtattttatttgtactagtga-attttcatgtagcaa

upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G21780.1 (Glycine max), 5'ss of exon 1
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctccttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcat----
 || ||||| ||| | ||||| ||  | ||||||| |||||||||||| |||||||| || ||||| ||| ||||||||||||| || || || || || |||   |||| | | | || |     ||  ||||  | |  ||    | | |   ||  || ||| | ||  ||||  |  |   |       |     |    
TGAAAAAGGAATTAGAGATGGCACAATTAGCTATGTAATGGATGATGGTGATGACATTTACATGCGCTCTAGGACTGGCACCATTATTGGCCCCCAAAATgtaa--atatttctctgttcactctgtag-attcatccttatcgatgtgtgt-ccaatgatagttatcagttgcatgtaagaggctgcccccaaaaatgttaaa

upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0080g01080.t01 (Vitis vinifera), 5'ss of exon 2
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttc--tttatctgctaacattctccttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcat
|||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||| || ||||| || ||||| ||||| |||   |    |    |  |||   ||||   |   | |||  || |    ||||||  |||  |  |  |    | |  | |    |   ||  |  |   
GGAGAAGGGTATTGGAGATGGTACTGTGAGTTATGGAATGGATGATGGAGATGACATATACATGCGGTCTTGGACAGGAACCATAATTGGTCCACACAATgtaagcagccttaaaacatttttcttgctgtaacatttcttattcattcattatgttc-caaaaggatcaatcctcttccagtggggtgccttaaactttt-

upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctc-cttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcat-------
 |||||||||||||| ||||| || || |||||||| ||||| ||||| |||||| | |  ||||| |||||||| ||||| || || ||        ||  ||  |  ||  || | |     ||||| |||  |  ||||  |  ||    |    | ||   ||| ||   ||   | ||  |    |     || ||       
AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGG--------ACCAAGCCACgtcagttccgtccagagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca

upper sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S60_129V6.1 (Physcomitrella patens), 5'ss of exon 3
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctccttcgtcttca----tatatgttaa-caattgttttgagaagca-tagattaatattatt-tgcatc-tcat
 ||||||||||| || ||||| || ||||||||||| |||||||| || || ||  | | |||||| |||||||| ||||| ||||| ||        ||  ||  || |   || |||     |||||||||     | | | | |    | | |||||| |          || |||| | |    | | |||  |||||  ||| 
TGAGAAAGGTATCGGCGATGGCACAGTGAGCTATGGCATGGATGACGGCGACGATGTATTTATGCGCTCTTGGACCGGCACTATCATTGG--------ACCAAGCCATgtgagttccttgcagagctaacatttgtggtagaccttacgaatgtgtgttaaacggcgaaaactaggagcaatgggcataaactatgatgcattatcac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124886561|gb|EH965463.1|EH965463
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAA
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAA
EST: gi|86018881|gb|DR314627.1|DR314627
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018873|gb|DR314619.1|DR314619
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATAAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018895|gb|DR314641.1|DR314641
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018901|gb|DR314647.1|DR314647
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018883|gb|DR314629.1|DR314629
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018874|gb|DR314620.1|DR314620
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018898|gb|DR314644.1|DR314644
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCYCACAAC                         ACTGTYCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|125001478|gb|EL073747.1|EL073747
EST:     TCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: TCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018902|gb|DR314648.1|DR314648
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018871|gb|DR314617.1|DR314617
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018884|gb|DR314630.1|DR314630
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018884|gb|DR314630.1|DR314630
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018884|gb|DR314630.1|DR314630
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018884|gb|DR314630.1|DR314630
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018880|gb|DR314626.1|DR314626
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018880|gb|DR314626.1|DR314626
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018880|gb|DR314626.1|DR314626
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018885|gb|DR314631.1|DR314631
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTT-TGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018887|gb|DR314633.1|DR314633
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018878|gb|DR314624.1|DR314624
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACTATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018882|gb|DR314628.1|DR314628
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018882|gb|DR314628.1|DR314628
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018882|gb|DR314628.1|DR314628
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018875|gb|DR314621.1|DR314621
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018891|gb|DR314637.1|DR314637
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018891|gb|DR314637.1|DR314637
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018891|gb|DR314637.1|DR314637
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018891|gb|DR314637.1|DR314637
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|164148761|gb|ES005651.1|ES005651
EST:     TCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGC
genomic: TCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGC
EST: gi|86018899|gb|DR314645.1|DR314645
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018872|gb|DR314618.1|DR314618
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018900|gb|DR314646.1|DR314646
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: gi|86018896|gb|DR314642.1|DR314642
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018896|gb|DR314642.1|DR314642
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-
EST: gi|86018896|gb|DR314642.1|DR314642
EST:     ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC                         G
genomic: ATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatat ... tatgtcacag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctccttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaagca