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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCACCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAGgtatgtttctcaatctgaatgatatttaattagattttatggttaaatgacggctttaattcaggtacatgagtatcttagtgaatcactcgttgaattg...

Basic information

species Arabidopsis thaliana
transcript AT3G51370.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164187328|gb|ES069676.1|ES069676
EST:     ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAG                         ATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTTCAAC
genomic: ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAGgtatgtttct ... tcctttgcagATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTT-CAAC
EST: gi|125290904|gb|EL304989.1|EL304989
EST:     ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAG                         ATATCTAGATCCATAGGCGACGTGTAT
genomic: ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAGgtatgtttct ... tcctttgcagATATCTAGATCCATAGGCGACGTGTAT
EST: gi|124717705|gb|EH809107.1|EH809107
EST:     GTGGCGTGTTAAGGGCCTTATTCAG                         ATATCTTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAA
genomic: GTGGCGTGTTAAGGGCCTTATTCAGgtatgtttct ... tcctttgcagATATC-TAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAA