1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgcatgtagacagtagacactaggtgcaaacgctagatatgtcaagataatcctggagattgaaattgaaaaggctaagatatgtttgttcctttgcagATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACCATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTA
species | Arabidopsis thaliana |
transcript | AT3G51370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAG ATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTTCAACEST: gi|125290904|gb|EL304989.1|EL304989
genomic: ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAGgtatgtttct ... tcctttgcagATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTT-CAAC
EST: ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAG ATATCTAGATCCATAGGCGACGTGTATEST: gi|124717705|gb|EH809107.1|EH809107
genomic: ATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAGgtatgtttct ... tcctttgcagATATCTAGATCCATAGGCGACGTGTAT
EST: GTGGCGTGTTAAGGGCCTTATTCAG ATATCTTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAA
genomic: GTGGCGTGTTAAGGGCCTTATTCAGgtatgtttct ... tcctttgcagATATC-TAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAA
agataatcctggagattgaaattgaaaaggctaagatatgtttgttcctttgcagATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACCATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTA
tttgttccttt CT-rich tract
attgaaattgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcatgtagacagtagacactaggtgcaaacgctagatatgtcaagataatcctggagattgaaattgaaaaggctaagatatgtttgttcctttgcagATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACCATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTA
- - - - - - - - -acactag
- - - - - - - - - - - - - -caaacgc
- - - - - - - - - - - - - - - - - - - - - -caagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt