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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGTGCAGGGAATTTAGAGAATCAATTCTTAGTGTCATGCCCCATCGCTGGgtaagtcttatgcctcctactacatgcttcgttagtgtaatatattagaaaaattgtttcaaagtacactgttgtctttgcatcag

Basic information

species Arabidopsis thaliana
transcript AT3G51050.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g01070.1 (Oryza sativa), 5'ss of exon 6
TTTGAGTGCAGGGAATTTAGAGAATCAATTCTTAGTGTCATGCCCCATCGCTGGgtaag--------tcttatgcctcctactacatgcttcgttagtgtaatatattagaaaaattgtttcaaagtacactgttgtctttgcatcag
|| || ||  ||||||||||||||||| ||||| | |||||||| ||||  ||||||||        |   ||  || |||   |||  |||  || | |||| | || | |  ||    ||| | |  | | || | |     ||||
TTCGAATGTCGGGAATTTAGAGAATCAGTTCTTGGGGTCATGCCTCATCATTGGgtaagaatagatattagataactactatatcatatttctctaatttaattttttgggatgatcaactcagattg-atttttttttccttttcag

upper sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0023g02750.t01 (Vitis vinifera), 5'ss of exon 8
TTTGAGTGCAGGGAATTTAGAGAATCAATTCTTAGTGTCATGCCCCATCGCTGGgtaagtcttatgcct-------------cctactacatgc-ttcgttagtgtaatatattagaaaaattgtttcaaagtacactgt---tgtctttgcatcag
||||| || |||||||||||||||||||| ||| | || ||||| |||| ||||||||| |  | |  |             | || |   ||| ||  |||   || | | |    |  ||  |   ||   |   |||     |||||  |||||
TTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGGgtaagacagaagtataaagtaaaccgaacttattctgtgccttttttaaactattttctctagatgatactggtaattcatgatgtaatcatctttaaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060085|gb|DR355842.1|DR355842
EST:     GTGCAGGGAATTTAGAGAATCAAATTCTTGGTGTCATGCCCCATCGCTGG                         GGACCGACGTGAAGATACATTATTGAAGCTTGCTCATTTCAGGCGACACAA
genomic: GTGCAGGGAATTTAGAGAATCAA-TTCTTAGTGTCATGCCCCATCGCTGGgtaagtctta ... tttgcatcagG-ACCGACGTGAAGATACATTATTGAAGCTTGCTCATTTCAGGCGACACAA