Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|146271364|gb|ES444406.1|ES444406EST: AGATCCCTTCTCCGGCTAAGGCTTAAAGTCCCCAACCTT TTGCAGGGTCTTGAGTAAATGGTGGACGCTGTTGTAACAGTGTTTTTAGA
genomic: AGAT-CCTTCT-CGGCTAAGGC-T-AAGT-CACAACCTTgtaagtttac ... tttcttgaagTTGCAGGGTC-TGAGTAAATGGTGGACGCTGTTGTAACAGTGTTTTTAGA
EST:
gi|146271363|gb|ES444405.1|ES444405EST: CAGATCCCTTCTCGGGCTAAGGCTAAGTCCACAACC-- TT----GGTCTGAGTAAATGGTGGACGCTGTTGTAACAGTGTTTTTAGAG
genomic: CAGAT-CCTTCTC-GGCTAAGGCTAAGT-CACAACCTTgtaagtttac ... tttcttgaagTTGCAGGGTCTGAGTAAATGGTGGACGCTGTTGTAACAGTGTTTTTAGAG
EST:
gi|146271365|gb|ES444407.1|ES444407EST: TGAAGCTTCAGATCCTTCTCGGCTAAGGCTAAGTCACAACC-- TT----GGTCTTGAGTAAATGGTGGACGCTGTTGTAACAGTGTTTTTAGAG
genomic: TGAAGCTTCAGATCCTTCTCGGCTAAGGCTAAGTCACAACCTTgtaagtttac ... tttcttgaagTTGCAGGGTC-TGAGTAAATGGTGGACGCTGTTGTAACAGTGTTTTTAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTCTCTATGTAAGCTCATTTTTCTGAAACAAGTTTTGCTAAAAAAATCCAAAGATCTGAAGCTTCAGATCCTTCTCGGCTAAGGCTAAGTCACAACCTTgtaagtttactttactttggttagatttgtttcaatgttctaggattctacatgtttcttgagaagatatggattagttaaagaataatccaatcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC