1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atattggtcttgattcttgagcttgttttatagttttgaatcagtttgattgatatcttgttgctttaaagctgatataatggatctatctgatatgcagATGGGTCAGAGCCACCCTACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAAACCACCACCAGAGAAGAGAAAGT
species | Arabidopsis thaliana |
transcript | AT3G50670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCGCGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTG ATGGGTCAGAGCCACCCTACTGGCTTAAC
genomic: AAGCTCGCGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGgttcgtctct ... tgatatgcagATGGGTCAGAGCCACCCTACTGGCTTAAC
ttgattgatatcttgttgctttaaagctgatataatggatctatctgatatgcagATGGGTCAGAGCCACCCTACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAAACCACCACCAGAGAAGAGAAAGT
atctgat putative branch site (score: 4)
tctatct CT-rich tract
tgatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattggtcttgattcttgagcttgttttatagttttgaatcagtttgattgatatcttgttgctttaaagctgatataatggatctatctgatatgcagATGGGTCAGAGCCACCCTACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAAACCACCACCAGAGAAGAGAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - gttttga
- - - - - - - - - - - - - - - - - - - - - agtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaaagc