1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gctgaaatctaatcatttctactgtccaatttaatcttagataagaccttgttaaagttgcataaatttttccttttctttggcttgatcatgtcaatagACAACGGCGAAGAAGAAAATCACCTCATCATTTTCCTTTCCTCAAGTGCTGGATATGGGATCGAGATTGGCAGAGTCTTCTCAAAACAAATTGACATACG
species | Arabidopsis thaliana |
transcript | AT3G49600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAAACGATGCATTTTCCTTCCTAAG ACAACGGCGAAGAAGAAAATCACCTCATCATTTTCCTTTCCTCAAGTGCTGEST: gi|124880896|gb|EH959798.1|EH959798
genomic: AGCTCAAACGATGCATTTTCCTTCCTAAGgtagtttcct ... atgtcaatagACAACGGCGAAGAAGAAAATCACCTCATCATTTTCCTTTCCTCAAGTGCTG
EST: TACCTCCGGTTATCACTTTTCAGCTCAAACGATGCATTTTCCTTCCTAAG ACAACGGCGAAGAAGAAAATCACCTEST: gi|125261811|gb|EL275896.1|EL275896
genomic: TACCTCCGGTTATCACTTTTCAGCTCAAACGATGCATTTTCCTTCCTAAGgtagtttcct ... atgtcaatagACAACGGCGAAGAAGAAAATCACCT
EST: ACCTCCGGTTATCACTTTTTCAGCTCAAACGATGCATTTTCCTTCCTAAG ACAACGGCGAAGAAGAAAATCACCTCAT
genomic: ACCTCCGGTTATCAC-TTTTCAGCTCAAACGATGCATTTTCCTTCCTAAGgtagtttcct ... atgtcaatagACAACGGCGAAGAAGAAAATCACCTCAT
accttgttaaagttgcataaatttttccttttctttggcttgatcatgtcaatagACAACGGCGAAGAAGAAAATCACCTCATCATTTTCCTTTCCTCAAGTGCTGGATATGGGATCGAGATTGGCAGAGTCTTCTCAAAACAAATTGACATACG
gcttgat putative branch site (score: 5)
ataaatttttcctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgaaatctaatcatttctactgtccaatttaatcttagataagaccttgttaaagttgcataaatttttccttttctttggcttgatcatgtcaatagACAACGGCGAAGAAGAAAATCACCTCATCATTTTCCTTTCCTCAAGTGCTGGATATGGGATCGAGATTGGCAGAGTCTTCTCAAAACAAATTGACATACG
-ctgaaat
- - - - - - - - - - - - - - - - - - - agataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataaa