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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaactatttttttgctctcctctttcgatttcactatttacggttgattttgagatatttggattgatttatggtaattgaacatagttcctcgatttttgtactgggaattttggtaaccttgataattgatttgaatcaagtcgtgttggtcgcaatctaatgtttcaattgttgtggtgcagACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAGTTGGTTCTTAAGGTTACTGATAACAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G49100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076557|gb|DR372314.1|DR372314
EST:     ACGAATTCGTTGATCGATCTGTTCAGCTTTTTCGAGCTGATCCGGAATCT                         ACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAGTTGGTTCTTAAG
genomic: ACGAATTCGTTGATCGATCTGTTCAGCTTTTTCGAGCTGATCCGGAATCTgtaggttaac ... tgtggtgcagACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAGTTGGTTCTTAAG
EST: gi|19875150|gb|AU235981.1|AU235981
EST:     ACGAATTCGTTGATCGATCTGTTCAGCTTTTTCGAGCTGATCCGGAATCT                         ACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAGTTGGTTCTTAAG
genomic: ACGAATTCGTTGATCGATCTGTTCAGCTTTTTCGAGCTGATCCGGAATCTgtaggttaac ... tgtggtgcagACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAGTTGGTTCTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgaatcaagtcgtgttggtcgcaatctaatgtttcaattgttgtggtgcagACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAGTTGGTTCTTAAGGTTACTGATAACAAAGAG
                           atctaat  putative branch site (score: 3)
                          aatctaat  TA-rich tract