1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttccccaactactctgtttcttaaatgttctgcgttctttaaaacaaagtatagaagatttaggttgtaagatcgatctcgtttgatttcaaac...
species | Arabidopsis thaliana |
transcript | AT3G48670.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT GEST: gi|116446994|gb|EG489586.1|EG489586
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT GEST: gi|116446994|gb|EG489586.1|EG489586
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT GEST: gi|116446994|gb|EG489586.1|EG489586
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT GEST: gi|116446994|gb|EG489586.1|EG489586
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT GEST: gi|116446994|gb|EG489586.1|EG489586
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT GEST: gi|116446994|gb|EG489586.1|EG489586
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT GEST: gi|116446994|gb|EG489586.1|EG489586
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
EST: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT G
genomic: TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttcc ... aaggaacaag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCTgtaagtttccccaactactctgtttcttaaatgttctgcgttctttaaaacaaagtatagaagatttaggttgtaagatcgatctcgtttgatttcaaac
- - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgatctcg