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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttatcattcaataaacattttatccttgttcacgataagtggcttttttgtttttcgtgtatcttgaaatgcccgcccgggtttcgcttaaaatttgcagCTGAAAGAGGACTGGTTTAGTCATAAAGACTTGGAAAAGTTCTGTGACGAGCTTCATTCTTTGGGAACTATTCATTGACTAAAGTGATAACTTCTAATGA

Basic information

species Arabidopsis thaliana
transcript AT3G48480.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444402|gb|EG486994.1|EG486994
EST:     TCATAGAAGGCGCTCCTGAGAACTTCAACGTCGAAGATATGCCGTATTTT                         CTGAAAGAGGACTGGTTTAGTCATAAAGACTTGGAAAAGTTCTGTGACGAG
genomic: TCATAGAAGACGCTCCTGAGAACTTCAACGTCGAAGATATGCCGTATTTTgtaagtttat ... aaatttgcagCTGAAAGAGGACTGGTTTAGTCATAAAGACTTGGAAAAGTTCTGTGACGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttttcgtgtatcttgaaatgcccgcccgggtttcgcttaaaatttgcagCTGAAAGAGGACTGGTTTAGTCATAAAGACTTGGAAAAGTTCTGTGACGAGCTTCATTCTTTGGGAACTATTCATTGACTAAAGTGATAACTTCTAATGA
                                          ttaaaattt  TA-rich tract