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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAATGTGACTATATCAGCTCCTCATATGCATGCAATGTGTCTTCAACTTCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGGgtttgttttactttctcttcttgaattagttttgtacattcttcttcttgcttttgaatatgatgaattttgatag

Basic information

species Arabidopsis thaliana
transcript AT3G48330.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116412559|gb|EG455151.1|EG455151
EST:     TCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGG                         GGACCGGGTACTTAACTGCTTGCTTTGCGGTTATGGTTGGAACCGAAGGGC
genomic: TCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGGgtttgtttta ... attttgatagGGACCGGGTACTTAACTGCTTGCTTTGCGGTTATGGTTGGAACCGAAGGGC
EST: gi|116412577|gb|EG455169.1|EG455169
EST:     TCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGG                         GGACCGGGTACTTAACTGCTTGCTTTGCGGTTATGGTTGGAACCGAAGGGC
genomic: TCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGGgtttgtttta ... attttgatagGGACCGGGTACTTAACTGCTTGCTTTGCGGTTATGGTTGGAACCGAAGGGC
EST: gi|116412593|gb|EG455185.1|EG455185
EST:     TCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGG                         GGACCGGGTACTTAACTGCTTGCTTTGCGGTTATGGTTGGAACCGAAGGGC
genomic: TCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGGgtttgtttta ... attttgatagGGACCGGGTACTTAACTGCTTGCTTTGCGGTTATGGTTGGAACCGAAGGGC