1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagctctcttgtactgaaggccattagaccagagtgctacccctattctaagattttttcatgtgtgcagGAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGTTAGTTCTGCTAAAGAGTGGCAAAAATGCTGATAAACCGTTTCTGCCACTAGATCGCAACG
species | Arabidopsis thaliana |
transcript | AT3G47000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGACATCCTCTCACAGATCGATCTTTGTTGCCTACTGTTGGTTGCAAG GAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGTTAGTTCTGCTAEST: gi|164060452|gb|ES009365.1|ES009365
genomic: TTGGACATCCTCTCACAGATCGATCTTTGTTGCCTACTGTTGGTTGCAAGgtgagctctc ... atgtgtgcagGAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGTTAGTTCTGCTA
EST: TTGCCTACTGTTGGTTGCAAG GAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGTTAGTTCTGCTA
genomic: TTGCCTACTGTTGGTTGCAAGgtgagctctc ... atgtgtgcagGAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGTTAGTTCTGCTA
gaaggccattagaccagagtgctacccctattctaagattttttcatgtgtgcagGAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGTTAGTTCTGCTAAAGAGTGGCAAAAATGCTGATAAACCGTTTCTGCCACTAGATCGCAACG
ttttttcat CT-rich tract
tattctaagatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctctcttgtactgaaggccattagaccagagtgctacccctattctaagattttttcatgtgtgcagGAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGTTAGTTCTGCTAAAGAGTGGCAAAAATGCTGATAAACCGTTTCTGCCACTAGATCGCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT